BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG01RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1485 0.0
>3x_Contig1738
Length = 21411
Score = 1485 bits (749), Expect = 0.0
Identities = 857/882 (97%), Gaps = 9/882 (1%)
Strand = Plus / Plus
Query: 47 ctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgctttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18926 ctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgctttc 18985
Query: 107 ccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcgatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18986 ccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcgatt 19045
Query: 167 ctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaaaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19046 ctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaaaag 19105
Query: 227 aaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacagaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19106 aaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacagaaa 19165
Query: 287 acgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccgaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19166 acgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccgaat 19225
Query: 347 cgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtctctg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19226 cgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtctctg 19285
Query: 407 ggacggaaaaactaaaagtggaacccggaccagatagtatcggaaggatgattgtgatga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19286 ggacggaaaaactaaaagtggaacccggaccagatagtatcggaaggatgattgtgatga 19345
Query: 467 taatacgttgtgtggttcagttgggtaggtatggctgttgcattatatatagacaatatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19346 taatacgttgtgtggttcagttgggtaggtatggctgttgcattatatatagacaatatg 19405
Query: 527 tctcgtccttttntttgtttttgttttctttggcattgactggttgtactactcttatnt 586
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 19406 tctcgtccttttttttgtttttgttttctttggcattgactggttgtactactcttattt 19465
Query: 587 gaagagtctcaaggtttagtattctacgatcaagattaaagtagagaaaccctcggattc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19466 gaagagtctcaaggtttagtattctacgatcaagattaaagtagagaaaccctcggattc 19525
Query: 647 gtgtttcctaaatgttaaacaactgtcaaatt-acaattttcaatttact-gacagattg 704
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 19526 gtgtttcctaaatgttaaacaactgtcaaattaacaattttcaaattactagacagattg 19585
Query: 705 ngagccgtgcctatggtgtcg-tttccatgctatcgacctattaacagagaacgaatatg 763
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 19586 ggagcggtgcctatggtgtcgttttccatgctatcgacctaataacagagaacgaatatg 19645
Query: 764 ctatttaagctattatgtaattcaatgatgacccattggtttcttactctgagacgtctt 823
||||| ||||||||||| ||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 19646 ctattaaagctattatgaaatccaatgatgacccattggttcctcactctgagacgtctt 19705
Query: 824 tgaa-aaaaatgcttgtcttgcaaac-caacttttaccattatttcaagtcgtttcagaa 881
|||| |||| ||| |||||||||||| |||| |||||||||||||||||||||| |||||
Sbjct: 19706 tgaagaaaagtgc-tgtcttgcaaacacaac-tttaccattatttcaagtcgttccagaa 19763
Query: 882 ttaaactgtttttaccaacgaacggttttggattcggggttg 923
|||||||||||||||||||| | | ||||||||||| ||||
Sbjct: 19764 -taaactgtttttaccaacgatc-gatttggattcggtgttg 19803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6730
Number of Sequences: 1807
Number of extensions: 6730
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)