BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG02FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1558 0.0
>3x_Contig1605
Length = 12373
Score = 1558 bits (786), Expect = 0.0
Identities = 813/820 (99%), Gaps = 2/820 (0%)
Strand = Plus / Plus
Query: 87 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9342 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 9401
Query: 147 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 9461
Query: 207 tccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9462 tccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 9521
Query: 267 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9522 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 9581
Query: 327 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9582 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 9641
Query: 387 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9642 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 9701
Query: 447 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 9761
Query: 507 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9762 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 9821
Query: 567 attcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaaggg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9822 attcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaaggg 9881
Query: 627 tcatctttacaagacggaataataccgaaacttcttaagaatttgctacatccttctaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9882 tcatctttacaagacggaataataccgaaacttcttaagaatttgctacatccttctaat 9941
Query: 687 ttacgaattgcgccattgaaaacggcttcagtgttcaacgatgtaatatactactacgga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9942 ttacgaattgcgccattgaaaacggcttcagtgttcaacgatgtaatatactactacgga 10001
Query: 747 aacaagaacaattttgccacctgcagagagctntatgcacaaatganatccgaaagtatc 806
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 10002 aacaagaacaattttgccacctgcagagagctttatgcacaaatgaaatccgaaggtatc 10061
Query: 807 gcaccaaacgtccaaacttataatttaatgttaagggaaccttctca-gaacttcaggtt 865
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 10062 gcaccaaacgtccaaacttataatttaatgttaa-ggaaccttctcaggaactccaggtt 10120
Query: 866 aattaaacaacaactcccatatcgcgaaacaatattttat 905
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 10121 aattaaacaacaactcccatatcgcgaagcaatattttat 10160
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6181
Number of Sequences: 1807
Number of extensions: 6181
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)