BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG02RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1471 0.0
>3x_Contig1696
Length = 16725
Score = 1471 bits (742), Expect = 0.0
Identities = 780/786 (99%), Gaps = 5/786 (0%)
Strand = Plus / Minus
Query: 48 cactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccaccaacat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7790 cactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccaccaacat 7731
Query: 108 catacattcaacaattagagaatatgataactcaatacttagagtttgttgatgatcctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 catacattcaacaattagagaatatgataactcaatacttagagtttgttgatgatcctt 7671
Query: 168 cttcgctcaggacaaaaaatatcaaaaccatgaagagtaatctagccgagttacagcaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 cttcgctcaggacaaaaaatatcaaaaccatgaagagtaatctagccgagttacagcaaa 7611
Query: 228 gattagagatttacatggatcgtgataacaaacaactagacgtggaaggatttagagcat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 gattagagatttacatggatcgtgataacaaacaactagacgtggaaggatttagagcat 7551
Query: 288 tatttgacaaaggtgaaaagtatctggaattgttgtcaaaaattcaacaaaaaagtctca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 tatttgacaaaggtgaaaagtatctggaattgttgtcaaaaattcaacaaaaaagtctca 7491
Query: 348 gtgaactttcacctttgaacaaaaattttgagagcttgggtcttaatgttagtgaagagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7490 gtgaactttcacctttgaacaaaaattttgagagcttgggtcttaatgttagtgaagagt 7431
Query: 408 atacgaaagtgaagcctccaaagtcgaagaccgtgccatttgaaattttaaatgggacaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7430 atacgaaagtgaagcctccaaagtcgaagaccgtgccatttgaaattttaaatgggacaa 7371
Query: 468 tagatctcttgcattctcaattaaagcacatcagggatattattgaagataataattcca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7370 tagatctcttgcattctcaattaaagcacatcagggatattattgaagataataattcca 7311
Query: 528 cgtatgctattgaggatttatttgaacagaaacttgaggtcgattcgttatatgaaaaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7310 cgtatgctattgaggatttatttgaacagaaacttgaggtcgattcgttatatgaaaaga 7251
Query: 588 ttgaacttttggtgaaaaaaataagagcagagcataagtaccgtttgaagttgcttcaat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7250 ttgaacttttggtgaaaaaaataagagcagagcataagtaccgtttgaagttgcttcaat 7191
Query: 648 ccgtttatgatagaagattgactgctcaaaagagagaacaagaaattgccaaagaggctc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 ccgtttatgatagaagattgactgctcaaaagagagaacaagaaattgccaaagaggctc 7131
Query: 708 agcaagctgacggtgaaaat-acgattcgattaaaaccatgggagaagagtcgatagagg 766
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 7130 agcaagctgacggtgaaaataacgattcgattaaaaccatggaagaagagtcgatagagg 7071
Query: 767 agcatgaagatgctaattttgaac-agatgaattat-atcgtcattt-acattatgt-ca 822
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||
Sbjct: 7070 agcatgaagatgctaattttgaacaagatgaattataatcgtcatttcacattatgtaca 7011
Query: 823 taaatt 828
||||||
Sbjct: 7010 taaatt 7005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7820
Number of Sequences: 1807
Number of extensions: 7820
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)