BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG03RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1195 0.0
>3x_Contig1167
Length = 4801
Score = 1195 bits (603), Expect = 0.0
Identities = 682/703 (97%), Gaps = 4/703 (0%)
Strand = Plus / Minus
Query: 45 gcttatccctcgaagaggaaaacttaacatgcagaaaagaccgcacaaaagcggttttga 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4769 gcttatccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttga 4710
Query: 105 aggctccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4709 aggctccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaa 4650
Query: 165 tttgtaccgtggaggctctctcgtcagttcatttttttatccactttttatcctctttct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4649 tttgtaccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaact 4590
Query: 225 gctacgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctcta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 gctacgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctcta 4530
Query: 285 tttcatattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 tttcatattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagt 4470
Query: 345 aggtctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgttt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 aggtctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgttt 4410
Query: 405 cgagaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4409 cgagaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatat 4350
Query: 465 ttatgggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4349 ttatgggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttga 4290
Query: 525 aagtaggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4289 aagtaggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgag 4230
Query: 585 agtctttgaaattttttttttttttatctttacgatcgaagagatggcgccatctattgt 644
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4229 agtctttgaaattttttttttttttatctttacgatcgaggagatggcgccatctatgta 4170
Query: 645 aacaaaacatcttaatagtagacccggattttattggcctgcatctttgacttacttgca 704
|||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||
Sbjct: 4169 aacaaaacatcttaatagtaga-ccggatatctatggcctgcatctttgacttactgcca 4111
Query: 705 tccatttaaccttcttattttagccataaacaattcaaacaaa 747
|||| ||||||||||||| | || ||||||||| |||||||||
Sbjct: 4110 tcca-ttaaccttcttatataag-cataaacaa-tcaaacaaa 4071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,391
Number of Sequences: 1807
Number of extensions: 16391
Number of successful extensions: 431
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)