BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG05FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1566 0.0
>3x_Contig1673
Length = 13723
Score = 1566 bits (790), Expect = 0.0
Identities = 808/814 (99%)
Strand = Plus / Plus
Query: 87 tttctgccataaaggaagatgaaaaaaaaaaaaagaaagtcgctttcaacgttttgataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8678 tttctgccataaaggaagatgaaaaaaaaaaaaagaaagtcgctttcaacgttttgataa 8737
Query: 147 ttcaaagatataggcaatcttttgtacatttaagttcaaagagcagttgattccaccgtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8738 ttcaaagatataggcaatcttttgtacatttaagttcaaagagcagttgattccaccgtt 8797
Query: 207 aattgggttttcaagtactcattaaatttgggaaacgtgataaatcgcattttttgcctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8798 aattgggttttcaagtactcattaaatttgggaaacgtgataaatcgcattttttgcctc 8857
Query: 267 ttttcaaatcattaatgaatggttcccaaacctgataagcacaacagctcaacagaggat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8858 ttttcaaatcattaatgaatggttcccaaacctgataagcacaacagctcaacagaggat 8917
Query: 327 gaagaaatatatggtattcttgacaagcctaatattaggcacgtccaatttggcttgaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8918 gaagaaatatatggtattcttgacaagcctaatattaggcacgtccaatttggcttgaat 8977
Query: 387 aaaagatttgcaacttggtacgggagtaatgtttattttggaagaaataagaggaccttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8978 aaaagatttgcaacttggtacgggagtaatgtttattttggaagaaataagaggaccttg 9037
Query: 447 ggcttcaaggaatcgaacaatgagcacaccgcaaaacaaagccctactgaaaagaagttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9038 ggcttcaaggaatcgaacaatgagcacaccgcaaaacaaagccctactgaaaagaagttt 9097
Query: 507 gaagatcagtattggattgataccctatacgtatgtgaatattgtttcaagtacactgat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9098 gaagatcagtattggattgataccctatacgtatgtgaatattgtttcaagtacactgat 9157
Query: 567 gatgaagcagagttaatcgcacatgagtgcttttgccgatataagaataagccacccggt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9158 gatgaagcagagttaatcgcacatgagtgcttttgccgatataagaataagccacccggt 9217
Query: 627 agaataaaatacagaagccccgaatacactatacgaagggtaaaaggttctaagcatgaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9218 agaataaaatacagaagccccgaatacactatacgaagggtaaaaggttctaagcatgaa 9277
Query: 687 gttttctgccaatgcttatgtctatttactaagctatttcttgataacaagtctgtctat 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9278 gttttctgccaatgcttatgtctatttactaagctatttcttgataacaagtctgtctac 9337
Query: 747 ttcaaatttaagcatttcgaattctatattgtgtatgagaacaattctacagtaccgatg 806
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9338 ttcaaagttaagcatttcgaattctatattgtgtatgagaacaattctacagtaccgatg 9397
Query: 807 gcatttttttcaaagaacttatattcctaccaccaaaataaccttgcatgtattcttgtc 866
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398 gcatttttttcaaaagacttatattcctaccaccaaaataaccttgcatgtattcttgtc 9457
Query: 867 tttccgccctatcaaagaaaaaaattgggtactc 900
||||||||||||||||||| || |||||||||||
Sbjct: 9458 tttccgccctatcaaagaagaagattgggtactc 9491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,724
Number of Sequences: 1807
Number of extensions: 15724
Number of successful extensions: 274
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)