BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG05RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 1300 0.0
>3x_Contig1490
Length = 9411
Score = 1300 bits (656), Expect = 0.0
Identities = 752/776 (96%), Gaps = 6/776 (0%)
Strand = Plus / Minus
Query: 49 ttgaataccacgatacttgagattctattcaagaattctggtctgaaatgtgctttaacg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3505 ttgaataccacgatacttgagattctattcaagaattctggtctgaaatgtgctttaacg 3446
Query: 109 gcactcatcaccaactctttggaaccctcagtaacctttgatccagtctgagcattgata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 gcactcatcaccaactctttggaaccctcagtaacctttgatccagtctgagcattgata 3386
Query: 169 aattgggcacccaaattagaagtcataattacaatacagttcgaacagtcaattgtctta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 aattgggcacccaaattagaagtcataattacaatacagttcgaacagtcaattgtctta 3326
Query: 229 ccttgaccactagtgattctgccgtcatctaacatttgcaaaagaacggtcaagacatca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 ccttgaccactagtgattctgccgtcatctaacatttgcaaaagaacggtcaagacatca 3266
Query: 289 gggtgggccttttcgacttcatcaaataacaacacactgtatggtcttctctgtaattga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 gggtgggccttttcgacttcatcaaataacaacacactgtatggtcttctctgtaattga 3206
Query: 349 ttagttaagaaaccaccttcttggtaaccaatgtaaccggcagtagtacctaataatttc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 ttagttaagaaaccaccttcttggtaaccaatgtaaccggcagtagtacctaataatttc 3146
Query: 409 gaaactgaatgtttctccatcaattctgaacaatcgattctgaccatagctttttcatca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 gaaactgaatgtttctccatcaattctgaacaatcgattctgaccatagctttttcatca 3086
Query: 469 ttaaacaagaaggatgcgactttcttagctaattcagtcttaccggaaccagataaacct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 ttaaacaagaaggatgcgactttcttagctaattcagtcttaccggaaccagataaacct 3026
Query: 529 aggaataagaaagatgccggttgattagggttagacaaaccagatctagaaagtctgaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 aggaataagaaagatgccggttgattagggttagacaaaccagatctagaaagtctgaca 2966
Query: 589 gcgttagaaacggctttcacagccttcatttgacccacaacttgttgcgattactcacgt 648
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 2965 gcgttagaaacggctttcacagcctccatttgacccacaacttgttgcgataactcacgt 2906
Query: 649 ttcatattgatcaactttgtgttttcagattcagttag-ttattcactggaataccggtt 707
| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 2905 tccatatggatcaactttgtgttttcagattcagttagtttattcactggaataccgg-t 2847
Query: 708 catt-tagccgcaggtttcggcaatacccttgcttgttaccacgttctttaccattgttt 766
|||| |||| ||| || ||||||||| ||| ||| | ||||||||||| ||||||||||
Sbjct: 2846 cattctagcggca-gtctcggcaataacctcgctgttaaccacgttcttcaccattgttt 2788
Query: 767 tagaacctttccctggattttttttcaaaaactttttggttccaatttctcaatac 822
|||||| ||||||||||| || |||| |||||||| ||||||||| ||||||||
Sbjct: 2787 cagaacc-ttccctggattcttcttcagcaacttttt-gttccaattcctcaatac 2734
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6851
Number of Sequences: 1807
Number of extensions: 6851
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)