BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG06FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1485 0.0
>3x_Contig1536
Length = 11572
Score = 1485 bits (749), Expect = 0.0
Identities = 792/801 (98%), Gaps = 4/801 (0%)
Strand = Plus / Plus
Query: 85 accttgctttctcaccggtacaaaaccagcatcaagagccagagctagggctgggccaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8839 accttgctttctcaccggtacaaaaccagcatcaagagccagagctagggctgggccaaa 8898
Query: 145 tagaaacccccgggcttctaagccaatgacatagtcgatcttcttgcctgtgaatttctc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8899 tagaaacccccgggcttctaagccaatgacatagtcgatcttcttgcctgtgaatttctc 8958
Query: 205 ttgcaggtgaagcttgaaggattcaatcaatttcttgaacaattgagggtctctgaaaat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8959 ttgcaggtgaagcttgaaggattcaatcaatttcttgaacaattgagggtctctgaaaat 9018
Query: 265 tggtaagaaatcttcgaataggataccctcttgtgggaagtttgggtactgacgcaaagc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9019 tggtaagaaatcttcgaataggataccctcttgtgggaagtttgggtactgacgcaaagc 9078
Query: 325 acctttcaactcagtagcatattcagtgatagacatcttccacttgatattcttatgaca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9079 acctttcaactcagtagcatattcagtgatagacatcttccacttgatattcttatgaca 9138
Query: 385 agtgcaataggttcttcttcaatattgaaagtgaaacaccccctatacaagtactgtaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9139 agtgcaataggttcttcttcaatattgaaagtgaaacaccccctatacaagtactgtaca 9198
Query: 445 atgaaataattaataacactgaataagagattacatatgaatcagttgccagtagttcct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9199 atgaaataattaataacactgaataagagattacatatgaatcagttgccagtagttcct 9258
Query: 505 catctttgatcctatgtgatgagcttcataaaaagtttttgaattttcggtattaattca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259 catctttgatcctatgtgatgagcttcataaaaagtttttgaattttcggtattaattca 9318
Query: 565 gtctagcaaaatttcactctgtacatgtgccaaagaaaatgaaaacatacgacagcgcta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9319 gtctagcaaaatttcactctgtacatgtgccaaagaaaatgaaaacatacgacagcgcta 9378
Query: 625 ctcataaatgctgcaaagaaaacggagattctggtcaattgctgagtataggatagtata 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9379 ctcataaatgctgcaaagaaaacggagattctggtcaattgctgagtataggatagtata 9438
Query: 685 tagtgtggttctgtaccagtgactactatggcatctcagagccataagtacgatttggga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9439 tagtgtggttctgtaccagtgactactatggcatctcagagccataagtacgatttggga 9498
Query: 745 cgaaatgaattgaacaagcctgattactacgtntgagttgacagagaaagcattgttctg 804
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct: 9499 cgaaatgaattgaacaagcctgattactacgt-tgagttgacagag-aagcatttgtctg 9556
Query: 805 acttttgaatatggaactctctttgctcgaatgagagttatgatattgcttctttacctt 864
||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 9557 actttgaaatatggaactctctttgctcgaatgagagttatgata-tgctcctttacctt 9615
Query: 865 tgtgaagcaatatctgaatat 885
|||| ||||||||||||||||
Sbjct: 9616 tgtg-agcaatatctgaatat 9635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7220
Number of Sequences: 1807
Number of extensions: 7220
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)