BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1400 0.0
>3x_Contig1416
Length = 10161
Score = 1400 bits (706), Expect = 0.0
Identities = 772/790 (97%), Gaps = 3/790 (0%)
Strand = Plus / Plus
Query: 48 aggtgcgtcaacaagtgtatagcaaggcaaatacaagtttgagcccggggaatcaaaaaa 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2769 aggtgcgtcaacaagtgtaaagcaaggcaaatacaagtttgagcccggggaatcaaaaaa 2828
Query: 108 taaccccatgatttaaatcttagcaagtagaataaaagatatagctatattgtagtaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2829 taaccccatgatttaaatcttagcaagtagaataaaagatatagctatattgtagtaaca 2888
Query: 168 gtgtttgtgagatatgcaaagtatatcggcaactctacctcgatagtaatttgtattgga 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2889 gtgtttgtgagatatgcaaagtatatcggcaactctacctcgatagtaatctgtattgga 2948
Query: 228 tagcaacttcaaagtgcataatccgatagtcatggactaaatgagggaagtaacaattag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2949 tagcaacttcaaagtgcataatccgatagtcatggactaaatgagggaagtaacaattag 3008
Query: 288 tatatctcatattaatcatttcacattggaatttgacagatcatattacccgcactatca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3009 tatatctcatattaatcatttcacattggaatttgacagatcatattacccgcactatca 3068
Query: 348 gcagtcacaactatgataaccacgtgatactattttctttgtatcaatccggtgggttgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3069 gcagtcacaactatgataaccacgtgatactattttctttgtatcaatccggtgggttgt 3128
Query: 408 cagaaggaaacttccttacacaatagaaactgcgttgttttagtatagaaaacagaacat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3129 cagaaggaaacttccttacacaatagaaactgcgttgttttagtatagaaaacagaacat 3188
Query: 468 acataaaggctattaggctactcagcgttttttcacggttattattgtccttttctttct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3189 acataaaggctattaggctactcagcgttttttcacggttattattgtccttttctttct 3248
Query: 528 gagtaactgtgttttgttaatcaacctacaattaaccttcaatagaaggcaacaaagaac 587
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3249 gagtaactttgttttgttaatcaacctacaattaaccttcaatagaaggcaacaaagaac 3308
Query: 588 tggtgttagtaccgagttttctgtaactggaaactggcgtcagtgctacttcattggcag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3309 tggtgttagtaccgagttttctgtaactggaaactggcgtcagtgctacttcattggcag 3368
Query: 648 tctgcatccactgcctgtaaagcattgacgatttcgaagaagaatcaatgttgactgttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3369 tctgcatccactgcctgtaaagcattgacgatttcgaagaagaatcaatgttgactgttt 3428
Query: 708 ggatctttg-aaagtttaagacttcctgataatc-gtgtctttgaaattctctagatgtt 765
||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 3429 ggatctttgcaaagtttaagacttcctgataatcggtgtctttgaattcctctagatgtt 3488
Query: 766 caataagatatttttataaagatttcaagaacttgcttgaaaagcatcttgccttaaaaa 825
||||| |||||| ||||||||||||||| |||||| |||||||||||||| || ||
Sbjct: 3489 caatagagtattttatcaaagatttcaagaac-tgcttgtaaagcatcttgcctaaataa 3547
Query: 826 tttggcccca 835
| ||||||||
Sbjct: 3548 tatggcccca 3557
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7609
Number of Sequences: 1807
Number of extensions: 7609
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)