BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG07FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1457 0.0
>3x_Contig1413
Length = 8782
Score = 1457 bits (735), Expect = 0.0
Identities = 815/831 (98%), Gaps = 8/831 (0%)
Strand = Plus / Minus
Query: 86 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6703 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 6644
Query: 146 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 6584
Query: 206 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 6524
Query: 266 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 6464
Query: 326 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctc 6404
Query: 386 aggttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aggttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 6344
Query: 446 ttccgctaccaaacgagaagaagatcttgagtgacctttatcatatgttgttgccttttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 ttccgctaccaaacgagaagaagatcttgagtgacctttatcatatgttgttgccttttg 6284
Query: 506 catcaacgctttatcgaatttggaagtcaattgaagaatttgaattgctaatcggcggat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6283 catcaacgctttatcgaatttggaagtcaattgaagaatttgaattgctaatcggcggat 6224
Query: 566 agaagcatcggcgctgcagagaaagaataaaccgttgccttcgacatcttccacgacagt 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 agaagcatcggcgctgcagagaaagaataaaccgttgccttcgacatcttccacgacag- 6165
Query: 626 tttgggtatttttccattcaattttctctaattcatgataattcgcttccaaagtttt-g 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6164 tttgggtatttttccattcaattttctctaattcatgataattcgcttccaaagttttgg 6105
Query: 685 ggggcagtttcattccattgagagcggcatctgattctgattgtggggatgtcg-tctta 743
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 6104 ggggcagtttcattccattgagagcggcatctgattctgattgt-tggatgtcgttctta 6046
Query: 744 gtaaaatc-tcgagccagcattcaagc-atttgacgtatagtgcaagcaatgttctgttt 801
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct: 6045 gtaaaatcttcgagccagcattcaagcaattcgacgtatagtgcaagcaatgttctgtat 5986
Query: 802 tctgcggaagaaagat-atacaagctataccttgatgtggtcttttcatcgaaatc-aat 859
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 5985 tctgcggaagaaagataatacaagctataccttgattgtgtcttttcatcgaaatcaaat 5926
Query: 860 gagtatttagcgaaccagtttattagggtgtagggattctttttggcagct 910
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5925 gagtatttagcgaaccaagttattagggtgtagggattctttttggcagct 5875
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6527
Number of Sequences: 1807
Number of extensions: 6527
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)