BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1235 0.0
>3x_Contig1642
Length = 16641
Score = 1235 bits (623), Expect = 0.0
Identities = 674/686 (98%), Gaps = 4/686 (0%)
Strand = Plus / Minus
Query: 48 cttccctcgaactataactttgaaatacataaaactgtatggaacattagaaagcacaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15554 cttccctcgaactataactttgaaatacataaaactgtatggaacattagaaagcacaaa 15495
Query: 108 gcaaagcgtgttgctattcaaatgcctgaagggttgct-catatactctttggtgataag 166
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15494 gcaaagcgtgttgctattcaaatgcctgaagggttgctgcatatactctttggtgataag 15435
Query: 167 tgatattttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15434 tgatattttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatgg 15375
Query: 227 tgcatgctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccatta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374 tgcatgctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccatta 15315
Query: 287 tgcacattcctgcttagttccgatcgatattactactatcaaggtactttacatctttgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15314 tgcacattcctgcttagttccgatcgatattactactatcaaggtactttacatctttgt 15255
Query: 347 cactatcaatattgatgagacacatctaataaagacgttacagaagaacttcccaagagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15254 cactatcaatattgatgagacacatctaataaagacgttacagaagaacttcccaagagg 15195
Query: 407 ttcacggattgctgcattcggaacaattcagtttaatccaactatccatagtatgaagga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15194 ttcacggattgctgcattcggaacaattcagtttaatccaactatccatagtatgaagga 15135
Query: 467 caaattgttgcagtcggaggaacacatgttatatatcatcccccctcagatcaaaccact 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15134 caaattgttgcagtcggaggaacacatgttatatatcatcccccctcagatcaaaccact 15075
Query: 527 ttcgaagggtgaagttcttgggtgtacttctgtaagactaaac-aggaacaaatagatgc 585
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 15074 ttcgaagggtgaagttcttgggtgtacttctgaaagactaaacaaggaacaaatagatgc 15015
Query: 586 gatggtttatgttggggatggtaggtttcatttagaatcgg-catgattcataaccctgg 644
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 15014 gatggtttatgttggggatggtaggtttcatttagaatcggccatgattcataaccctga 14955
Query: 645 aatttctgctttcagatatgatccctattatagaagattcaccgnag-acgtttcgatca 703
|||| ||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 14954 aattcctgctttcagatatgatccctataatagaagattcaccagagaacgttacgatca 14895
Query: 704 gaagcaattggtagaagtaagagcat 729
||||||||||||||| ||||||||||
Sbjct: 14894 gaagcaattggtagaggtaagagcat 14869
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6707
Number of Sequences: 1807
Number of extensions: 6707
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)