BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG08FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1546 0.0
>3x_Contig1489
Length = 10722
Score = 1546 bits (780), Expect = 0.0
Identities = 798/802 (99%), Gaps = 2/802 (0%)
Strand = Plus / Minus
Query: 88 ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 2248
Query: 148 ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 2188
Query: 208 aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 2128
Query: 268 ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 2068
Query: 328 agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 2008
Query: 388 agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 1948
Query: 448 tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 1888
Query: 508 gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 1828
Query: 568 tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 1768
Query: 628 attagtcactgagttactgaaatattataaggcctattactccaaagcttatcctctagt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 attagtcactgagttactgaaatattataaggcctattactccaaagcttatcctctagt 1708
Query: 688 ggacaaggaaattctttccaaaaccatccacaatggatttgataaatatgtgaggaccgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 ggacaaggaaattctttccaaaaccatccacaatggatttgataaatatgtgaggaccgg 1648
Query: 748 tatcacagaatccccatcgaaggaaagcggganaatgtactccgttgtgtttaatcgatg 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1647 tatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgtttaatcgatg 1588
Query: 808 gtttgatagtcagtcggaatttaatactcatgttcaaactgaacagtttaatattgcatt 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1587 gtttgatagtcagtcggaatttaatactcatgttcaaactgaacagtttaatattgca-t 1529
Query: 868 tgtctcgg-atanaaagcgttt 888
|||||||| ||| |||||||||
Sbjct: 1528 tgtctcggaatagaaagcgttt 1507
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6736
Number of Sequences: 1807
Number of extensions: 6736
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)