BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG08RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig551 1088 0.0
3x_Contig1326 309 5e-84
>3x_Contig551
Length = 2723
Score = 1088 bits (549), Expect = 0.0
Identities = 612/627 (97%), Gaps = 5/627 (0%)
Strand = Plus / Minus
Query: 193 cttgcttggctttccgtgacgatatatttgatgattgtgaaactttgttcagcgaagcca 252
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2723 cttgcttggctttccgtgacgatagatttgatgattgtgaaactttgttcagcgaagcca 2664
Query: 253 gaagaaagttcccaactgctccagaagttccaaacttttatgccgaaattttggctgcta 312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2663 gaagaaagttcccaactgctccagaagttccaaacttntatgccgaaattttggctgcta 2604
Query: 313 agaactctctagatgctgccatcaagcaatacgatattgccatcaagttggaagatgctt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 agaactctctagatgctgccatcaagcaatacgatattgccatcaagttggaagatgctt 2544
Query: 373 taccaggtattcacgtcggtattgctccaatgattggtaaggccactgctttgattagaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 taccaggtattcacgtcggtattgctccaatgattggtaaggccactgctttgattagaa 2484
Query: 433 acccaaccgttgaaaacttcgttgaagcttccgaattatttgaagaagcttgtaagatcg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 acccaaccgttgaaaacttcgttgaagcttccgaattatttgaagaagcttgtaagatcg 2424
Query: 493 atccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaacaagaagaaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 atccaagatccgaacaagccaagatcggtcttgctcaactaaaattgcaacaagaagaaa 2364
Query: 553 ttgatgatgccattcaattgttcgaagatgctgccgatctctcaagatctttcgatgaan 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 ttgatgatgccattcaattgttcgaagatgctgccgatctctcaagatctttcgatgaaa 2304
Query: 613 aactacaagctacttcttttcgctgaggctaccaaggttcagaaaaagatcagagctgat 672
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2303 aactacaagctactac-tttcgctgaggctaccaaggtccagaaaaagatcagagctgat 2245
Query: 673 ccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaaggtctcgcg 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 ccattcattaagggtaagatcgacgaagctattgcagcctaccgtgctcaaggtctcgcg 2185
Query: 733 taaattagcattgat-tttacggatgaatttaattcattttaattttgagtaaagcttca 791
|||||||||| |||| || ||| ||||||||||||||||| || | ||||||||||| ||
Sbjct: 2184 taaattagca-tgatattcacgaatgaatttaattcatttcaa-tatgagtaaagctaca 2127
Query: 792 atagctcattggtttttgtctcacctt 818
|||||||||| ||||||||||||||||
Sbjct: 2126 atagctcatt-gtttttgtctcacctt 2101
>3x_Contig1326
Length = 4875
Score = 309 bits (156), Expect = 5e-84
Identities = 176/180 (97%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 49 tagaattagatccaaactgttctgctgtttactatcatcgcggtcaaatgcattttgttg 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tagaattagatccaaactgctctgctgtttactatcatcgcggtcaaatgcattttgttg 126
Query: 109 ttgaaaacttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttgaaaacttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaa 66
Query: 169 acatttttgcctacatccaatgtgcttgcttggctttcc-gtgacg-atatatttgatga 226
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 65 acatttttgcctacatccaatgtgcttgcttggctttcctgtgacgaatagatttgatga 6
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7958
Number of Sequences: 1807
Number of extensions: 7958
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)