BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG09FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 896 0.0
>3x_Contig1666
Length = 16162
Score = 896 bits (452), Expect = 0.0
Identities = 488/500 (97%)
Strand = Plus / Plus
Query: 86 agatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcacccag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15560 agatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcacccag 15619
Query: 146 agttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatggcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15620 agttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatggcag 15679
Query: 206 tatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaattttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15680 tatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaattttc 15739
Query: 266 tgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattatcgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15740 tgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattatcgat 15799
Query: 326 aggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccctgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15800 aggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccctgaa 15859
Query: 386 gacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctggttac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15860 gacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctggttac 15919
Query: 446 actttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagatgctc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15920 actttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagatgctc 15979
Query: 506 agagctcatcaactatgtaacgagggatatcaggattattttggagggaaagtcaccact 565
|||||||||||||||||||||| ||| ||||||| ||||| | |||||||||||
Sbjct: 15980 agagctcatcaactatgtaacgcgggctatcaggcttattctcccccccaagtcaccact 16039
Query: 566 gtttggtccgctcccaatta 585
|||||| |||||||||||||
Sbjct: 16040 gtttggcccgctcccaatta 16059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5888
Number of Sequences: 1807
Number of extensions: 5888
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)