BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG09RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1516 0.0
>3x_Contig581
Length = 1616
Score = 1516 bits (765), Expect = 0.0
Identities = 812/825 (98%), Gaps = 2/825 (0%)
Strand = Plus / Minus
Query: 49 agcacccatctctctacttttaccggattggccgaaaccaccgaatggaacattttgatg 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgatg 776
Query: 109 gaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaat 716
Query: 169 agccttgttaacatccttagtgtgaataccggcagcaagaccatatttatattcgttagc 228
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 715 agccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttagc 656
Query: 229 cttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaagat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaagat 596
Query: 289 ttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataaa 536
Query: 349 gtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtacc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtacc 476
Query: 409 gacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttggaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttggaa 416
Query: 469 aacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaatttttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaatttttc 356
Query: 529 taagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagacttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagacttc 296
Query: 589 accggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 accggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcatc 236
Query: 649 accgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 accgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaatc 176
Query: 709 ggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 175 ggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgaccttctt 116
Query: 769 gatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgggatgatgtt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gatgtcaggatgggtacaaattctttcaccgacgattttaccgaaacctgggatgatgtt 56
Query: 829 aaca-cacccttttgttcaacatcttcttgcaccaattggcatgc 872
|||| |||||||| || || || ||||||||||||||| ||||||
Sbjct: 55 aacaacacccttt-gtacaccagcttcttgcaccaattagcatgc 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6869
Number of Sequences: 1807
Number of extensions: 6869
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)