BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG11FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1112 0.0
>3x_Contig1426
Length = 8319
Score = 1112 bits (561), Expect = 0.0
Identities = 570/573 (99%)
Strand = Plus / Minus
Query: 87 ccgctgtaccgaatttttgaacaatgtatttttccacaggaatgaagtagctgttaagct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccgctgtaccgaatttttgaacaatgtatttttccacaggaatgaagtagctgttaagct 517
Query: 147 ctttagcgggggtctcatctcctgtctgatctttcttatacgattcgagacattgaccaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctttagcgggggtctcatctcctgtctgatctttcttatacgattcgagacattgaccaa 457
Query: 207 ctatattggataactgttcaaggtccggcagtatcttgccctcagtatccctagaatttg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctatattggataactgttcaaggtccggcagtatcttgccctcagtatccctagaatttg 397
Query: 267 ctgtttgtctcaaaacaacagtcacctcacatattgtacatttgaacttaactgcgtcta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgtttgtctcaaaacaacagtcacctcacatattgtacatttgaacttaactgcgtcta 337
Query: 327 taggatgtcgtaacaaggttccgcaacatctacatcgagtttccctaaattttggcgggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taggatgtcgtaacaaggttccgcaacatctacatcgagtttccctaaattttggcgggt 277
Query: 387 cttcacaatccaacctatccgaactttgatagcggatttttatcttttccctaccaacaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcacaatccaacctatccgaactttgatagcggatttttatcttttccctaccaacaa 217
Query: 447 tgtgtaatgggttaaacttgaacatattcgagcagctactgatggacagtcagacttctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgtgtaatgggttaaacttgaacatattcgagcagctactgatggacagtcagacttctt 157
Query: 507 cctctaagttcatttcaacaaacttgtaaatttagggttggatagtcgaaagcacaaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cctctaagttcatttcaacaaacttgtaaatttagggttggatagtcgaaagcacaaaag 97
Query: 567 attgtgtcaaatttattacttttttttaccaactgacaatatcatctggaatacacaggc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 attgtgtcaaatttattacttttttttaccaactgacaatatcatctggaatacacaggc 37
Query: 627 ctgtaaccatttcttaatttgaacagacaaaaa 659
|||||||||||||||||||| | || |||||||
Sbjct: 36 ctgtaaccatttcttaatttaaccaaacaaaaa 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8081
Number of Sequences: 1807
Number of extensions: 8081
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)