BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZG11RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 870 0.0
>3x_Contig1686
Length = 15382
Score = 870 bits (439), Expect = 0.0
Identities = 502/523 (95%)
Strand = Plus / Plus
Query: 47 ttaatcacgaaaggcattttcctgaacgaaagtggaggataccagttctaattttgtcct 106
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11009 ttaatcacgaaaggcataaacctgaacgaaagtggaggataccagttctaattttgtcct 11068
Query: 107 ataattgtatatatatatatatatatttttttgcaatgggattataaccgcatgctacta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11069 ataattgtatatatatatatatatatttttttgcaatgggattataaccgcatgctacta 11128
Query: 167 gatagaagtgcagaacacgtcaatggggacgacccgaagggtcgttctttttatctttct 226
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11129 gatagaagtgcagaacacgtcaatggggacgacccgaagggtcgttccctttatctttct 11188
Query: 227 ttttgtcctattgagagtcacatgacctgtatgaaactggctcctctttaccttggaaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11189 ttttgtcctattgagagtcacatgacctgtatgaaactggctcctctttaccttggaaat 11248
Query: 287 ccggaaaaactttcgcgaaccaaatatacccgaaagtttttccaataattccgggtaatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11249 ccggaaaaactttcgcgaaccaaatatacccgaaagtttttccaataattccgggtaatc 11308
Query: 347 atatgcctgtctccattttccgacgaacggagaggctttcaaacggctttgctttatacc 406
||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 11309 atatgcctgtctccattttccgacgaacggagacccttttaaacggatttgctttatacc 11368
Query: 407 tcattcttacaaaagctacgtggtttatgggtgttctgcggaaactcatcatacactgga 466
| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11369 ttattcttacaaaacctacgtggtttatgggtgttctgcggaaactcataatacactgga 11428
Query: 467 agctaagcaaccagtgtcggaggggaaaagggtccccttcgcctaaatttcatcggaaag 526
||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||
Sbjct: 11429 agctaagcaaccagtgttgggggggcaaagggaccccttcgcctaaatttcatcggaaag 11488
Query: 527 tgattttgaaaaaagacgaagccagatatcaaagggaaaaaaa 569
||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 11489 tgattttgaaaccagacgaagccagatatccccgggaaaaaaa 11531
Score = 347 bits (175), Expect = 2e-95
Identities = 276/302 (91%), Gaps = 6/302 (1%)
Strand = Plus / Plus
Query: 600 ccgcgcggcttgccaaggaaatctaatccccatatattgcatttctgacaccgagagacc 659
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 11560 ccgcgcggcttgccaagggaatctaatccc-atatatcgcatttctgacaccgagagacc 11618
Query: 660 gtattaactattctcatgcgcaaacggttaaaagatgtagaatttctacattgtgctaac 719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11619 gtattaactattctcatgcgcaaacggttaaaagatgtagaattcctacattgtgctaac 11678
Query: 720 atgctggagaggatagctccaaaaaaa-ttacccaacgcagttttagcagcggtacactt 778
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 11679 atgctggagaggatagctccaaaaaaatttacccaacgcagtagtagcagcggtacactt 11738
Query: 779 gcttaaagtcta-cag-aaatttgtttancacctttagcgtcacctgatggaaatcgacg 836
|||||||| ||| ||| |||| ||| | ||||| ||||||||||||||||||||||||
Sbjct: 11739 gcttaaagcctaccagaaaatatgtcaacaaccttcagcgtcacctgatggaaatcgacg 11798
Query: 837 ccttggtcttttttt-ttttccgtatttttgtggaag-tgtcatggattttgttcacttt 894
|||| | ||||||| |||||||||||||| ||| || |||||||| |||||| |||||
Sbjct: 11799 tcttgttttttttttcttttccgtatttttctggcagttgtcatggcatttgtttacttt 11858
Query: 895 tt 896
||
Sbjct: 11859 tt 11860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,755
Number of Sequences: 1807
Number of extensions: 16755
Number of successful extensions: 1946
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)