BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH03FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1312 1469 0.0
>3x_Contig1312
Length = 5472
Score = 1469 bits (741), Expect = 0.0
Identities = 776/781 (99%), Gaps = 5/781 (0%)
Strand = Plus / Plus
Query: 87 ccctctgttaccagattcctttgcaaatcaattttgttacagaaattcgaattcaatcac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 ccctctgttaccagattcctttgcaaatcaattttgttacagaaattcgaattcaatcac 2382
Query: 147 acaaatatagtatgaggagtgcgaggatgaatggagctgatcggtccgacaaactagtac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 acaaatatagtatgaggagtgcgaggatgaatggagctgatcggtccgacaaactagtac 2442
Query: 207 cataatgtcgatattgatttctatcttgctgatgaaacataaatagaaaacagaaaattc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 cataatgtcgatattgatttctatcttgctgatgaaacataaatagaaaacagaaaattc 2502
Query: 267 catcgtaatctgttttcaccttaaatgcaggatttctctaatctttaaacggtaaaaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 catcgtaatctgttttcaccttaaatgcaggatttctctaatctttaaacggtaaaaaaa 2562
Query: 327 aattctacatgttgatgagtctctgacaagagaaaaaaaaatattgtaaaaagagaaacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 aattctacatgttgatgagtctctgacaagagaaaaaaaaatattgtaaaaagagaaacc 2622
Query: 387 gcacaacttacgtgttagagttgcatgaaagaagaaatacaaacattcatcaaacccgcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 gcacaacttacgtgttagagttgcatgaaagaagaaatacaaacattcatcaaacccgcc 2682
Query: 447 agcgaactaacgttttcttttcacatatctgtattctctttaacggttctcatccaattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 agcgaactaacgttttcttttcacatatctgtattctctttaacggttctcatccaattt 2742
Query: 507 agtggtctaacagctacgcgcgagttccttcactctcttttttttttcattctctcgttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 agtggtctaacagctacgcgcgagttccttcactctcttttttttttcattctctcgttc 2802
Query: 567 tttcctttggttgctcttaacattacgttgccttttaaaaggacatacagttttctcagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 tttcctttggttgctcttaacattacgttgccttttaaaaggacatacagttttctcagt 2862
Query: 627 tactactcgtcttctagttttctatccatacggaacgatttactgctagcaaactccagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 tactactcgtcttctagttttctatccatacggaacgatttactgctagcaaactccagg 2922
Query: 687 gcctttatatcattgggaaatattttcccctgacattacagattgaaatttcacaggtct 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 gcctttatatcattgggaaatattttcccctgacattacagattgaaatttcacaggtct 2982
Query: 747 gtgagagttaatcgagccattttgcagccaaactgggttttgtcattcgttacctatccc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2983 gtgagagttaatcgagccattttgcagccaaactgggttttgtcattcgttacctatccc 3042
Query: 807 aaat-acaca-ttaaaggatcttgttcaa-tacgtgg-aaaagctac-ttttattgaatt 861
|||| ||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct: 3043 aaataacacagttaaaggatcttgttcaattacgtggaaaaagctacattttattgaatt 3102
Query: 862 t 862
|
Sbjct: 3103 t 3103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,089
Number of Sequences: 1807
Number of extensions: 10089
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)