BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC25ZH04RM1.SCF screened BAC_end (897 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1249 1082 0.0 >3x_Contig1249 Length = 5939 Score = 1082 bits (546), Expect = 0.0 Identities = 751/803 (93%), Gaps = 13/803 (1%) Strand = Plus / Minus Query: 41 aacttgactgctgacaaatggggtgttaacgtccaaactttgtctggttctccagctaac 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5348 aacttgactgctgacaaatggggtgttaacgtccaaactttgtctggttctccagctaac 5289 Query: 101 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5288 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 5229 Query: 161 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5228 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 5169 Query: 221 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5168 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 5109 Query: 281 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5108 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 5049 Query: 341 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5048 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 4989 Query: 401 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4988 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 4929 Query: 461 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4928 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 4869 Query: 521 gctatgatcttcttcag-agaggtatcagatctgttaaccc-aagactggtaaggaaat- 577 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4868 gctatgatcttcttcagaagaggtatcagatctgttaacccaaagactggtaaggaaatc 4809 Query: 578 ccatacgattggaaaggt-caat-aactntctcgtctt-tcaggtcaccaaggtggttca 634 |||||||||| | ||||| |||| |||| |||||| ||||||||||||||||| || Sbjct: 4808 ccatacgatttggaaggtccaatcaacttctccgtcttcccaggtcaccaaggtggtcca 4749 Query: 635 cacaaacattacatctctgnctttgcctactgttttgaagcaggcc-acacttcagattt 693 ||||| ||| |||||||| | ||| |||||| ||||||||| ||| ||||| |||| || Sbjct: 4748 cacaaccataccatctctgcc-ttggctactgctttgaagcaagccaacactccagaatt 4690 Query: 694 c-aggagttccaaactcagttcttgaag-acgcttaagttcttgagaattcctttaagaa 751 | |||||| ||||||||| |||||||| ||||| | ||||| || | ||||| ||||| Sbjct: 4689 caaggagtaccaaactcaagtcttgaagaacgctaaggttctagaagagtccttcaagaa 4630 Query: 752 gttgggttac-gaatattgttccga-gggaccgacttccctttggncttagactccttga 809 |||||||||| || || || ||||| || || |||| || | ||| ||||| |||||||| Sbjct: 4629 gttgggttacagattagtg-tccgatggtactgactcccatatggtcttagtctccttga 4571 Query: 810 aagaaaggggtgtcaatggtgct 832 ||||| ||||||| |||||||| Sbjct: 4570 gagaaaagggtgtcgatggtgct 4548 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6124 Number of Sequences: 1807 Number of extensions: 6124 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 897 length of database: 10,358,551 effective HSP length: 16 effective length of query: 881 effective length of database: 10,329,639 effective search space: 9100411959 effective search space used: 9100411959 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)