BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH04RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1249 1082 0.0
>3x_Contig1249
Length = 5939
Score = 1082 bits (546), Expect = 0.0
Identities = 751/803 (93%), Gaps = 13/803 (1%)
Strand = Plus / Minus
Query: 41 aacttgactgctgacaaatggggtgttaacgtccaaactttgtctggttctccagctaac 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5348 aacttgactgctgacaaatggggtgttaacgtccaaactttgtctggttctccagctaac 5289
Query: 101 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 5229
Query: 161 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5228 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 5169
Query: 221 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5168 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 5109
Query: 281 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5108 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 5049
Query: 341 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 4989
Query: 401 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4988 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 4929
Query: 461 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4928 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 4869
Query: 521 gctatgatcttcttcag-agaggtatcagatctgttaaccc-aagactggtaaggaaat- 577
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4868 gctatgatcttcttcagaagaggtatcagatctgttaacccaaagactggtaaggaaatc 4809
Query: 578 ccatacgattggaaaggt-caat-aactntctcgtctt-tcaggtcaccaaggtggttca 634
|||||||||| | ||||| |||| |||| |||||| ||||||||||||||||| ||
Sbjct: 4808 ccatacgatttggaaggtccaatcaacttctccgtcttcccaggtcaccaaggtggtcca 4749
Query: 635 cacaaacattacatctctgnctttgcctactgttttgaagcaggcc-acacttcagattt 693
||||| ||| |||||||| | ||| |||||| ||||||||| ||| ||||| |||| ||
Sbjct: 4748 cacaaccataccatctctgcc-ttggctactgctttgaagcaagccaacactccagaatt 4690
Query: 694 c-aggagttccaaactcagttcttgaag-acgcttaagttcttgagaattcctttaagaa 751
| |||||| ||||||||| |||||||| ||||| | ||||| || | ||||| |||||
Sbjct: 4689 caaggagtaccaaactcaagtcttgaagaacgctaaggttctagaagagtccttcaagaa 4630
Query: 752 gttgggttac-gaatattgttccga-gggaccgacttccctttggncttagactccttga 809
|||||||||| || || || ||||| || || |||| || | ||| ||||| ||||||||
Sbjct: 4629 gttgggttacagattagtg-tccgatggtactgactcccatatggtcttagtctccttga 4571
Query: 810 aagaaaggggtgtcaatggtgct 832
||||| ||||||| ||||||||
Sbjct: 4570 gagaaaagggtgtcgatggtgct 4548
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6124
Number of Sequences: 1807
Number of extensions: 6124
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)