BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH07RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1388 0.0
>3x_Contig1250
Length = 5563
Score = 1388 bits (700), Expect = 0.0
Identities = 747/760 (98%), Gaps = 2/760 (0%)
Strand = Plus / Plus
Query: 52 gtatttcgaaattctgtgcactcttagggttttcaaagcagaagaactttgcagagatag 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 gtatttcgaaattctgtgcactcttagggttttcaaagcagaagaactttgcagagatag 3209
Query: 112 ccattggattggacattaaattggaaataagttctaatgtcgatctttgaattctgaccg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3210 ccattggattggacattaaattggaaataagttctaatgtcgatctttgaattctgaccg 3269
Query: 172 atgaatccaataagagattctctatactatcccaatactgagcattactcaagatgattt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3270 atgaatccaataagagattctctatactatcccaatactgagcattactcaagatgattt 3329
Query: 232 tgccgagatctactccctggtttatagtagccaaatttgtcaacgctaataatgcttcgt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 tgccgagatctactccctggtttatagtagccaaatttgtcaacgctaataatgcttcgt 3389
Query: 292 aagtatctaattgtgtgaattgaagttccgataaagcgttgtcatttggtaaaggtaaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3390 aagtatctaattgtgtgaattgaagttccgataaagcgttgtcatttggtaaaggtaaat 3449
Query: 352 tttcaaataagaacggtgctgcgctcaacggtgaatatttgctgaacgcagtctctggat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 tttcaaataagaacggtgctgcgctcaacggtgaatatttgctgaacgcagtctctggat 3509
Query: 412 tcacatagatgagtgttttcgatagtgctcttatcgatagaagataccattcatctttag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 tcacatagatgagtgttttcgatagtgctcttatcgatagaagataccattcatctttag 3569
Query: 472 aaaggttccttttgtgtgctaaaaataccaagagcatcaatccagcaccctgtttcacac 531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3570 aaaggttccttttttgtgctaaaaataccaagagcatcaatccagcaccctgtttcacac 3629
Query: 532 attctgatatctgtgttttatctcttggcacattatatatgattcttatggcttgattgt 591
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3630 attctgatatctgtgttttatctcttgtcacattatatatgattcttatggcttgattgt 3689
Query: 592 aagatgaggtggatagttttatcgatttttaagaaccgatcaagtctaaatcgataatat 651
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3690 aagatgaggtggatagttttatcgattttaaagaaccgatcaagtctaaatcgataatat 3749
Query: 652 aatcacggttaaactcttctatgtccttaacattttccaatgtcggctcgtcattctttt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3750 aatcacggttaaactcttctatgtccttaacattttccaatgtcggctcgtcattctttt 3809
Query: 712 cttggttggttttcaattgaagcttttaatttatggactggatcctcatttttggaccgg 771
|||||||||||||||| ||||||||||||||||| ||||| ||||||||| | ||| ||
Sbjct: 3810 cttggttggttttcaa-tgaagcttttaatttatcgactgtatcctcattctgtgacggg 3868
Query: 772 tgctcacttacgtttgctaatattaaacaagattccgtat 811
|||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 3869 tgctcacttacgtttgctaata-taatcaagagtccgtat 3907
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7440
Number of Sequences: 1807
Number of extensions: 7440
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)