BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1546 0.0
>3x_Contig1801
Length = 57606
Score = 1546 bits (780), Expect = 0.0
Identities = 846/862 (98%), Gaps = 5/862 (0%)
Strand = Plus / Minus
Query: 49 aaagaaacgaatcacatattactgccatacggaatcaatgctgaacattgacaatgtcag 108
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34527 aaagaaacgaatcacatagcactgccatacggaatcaatgctgaacattgacaatgtcag 34468
Query: 109 aataccccaagcaaaagtgcagaaactcaaccaaatccgaggtttgattctcaatagaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34467 aataccccaagcaaaagtgcagaaactcaaccaaatccgaggtttgattctcaatagaat 34408
Query: 169 caaattatgagggatcatacctaacaaatatccaacggtgaaacacgtattatcgatatt 228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 34407 caaattatgagggatcatacctaacaaatatccaacggtgaaacacgtattagcgatatt 34348
Query: 229 gaactgatttgacttgaacccgagatcctctttcataccggaaacataagcattggtgaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34347 gaactgatttgacttgaacccgagatcctctttcataccggaaacataagcattggtgaa 34288
Query: 289 accgattctatccacatagttgatccaatattgcaagcagacaaaagaaagaacggtcaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34287 accgattctatccacatagttgatccaatattgcaagcagacaaaagaaagaacggtcaa 34228
Query: 349 atcgacccgaaatagcttgcccatggcgtgattacactttgatgttattcagctgtcctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34227 atcgacccgaaatagcttgcccatggcgtgattacactttgatgttattcagctgtcctt 34168
Query: 409 ctaggactcttggcggtgtataccagtacctatttctctctgaagagatgtcacaatctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34167 ctaggactcttggcggtgtataccagtacctatttctctctgaagagatgtcacaatctg 34108
Query: 469 ttgactcaccaactttaagatgatcaaaaaaccggaacgatatagtacaatttgatgaca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34107 ttgactcaccaactttaagatgatcaaaaaaccggaacgatatagtacaatttgatgaca 34048
Query: 529 ctatttatatacaaacagataataagtacgtataaataccattcaacactcaaacgacag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34047 ctatttatatacaaacagataataagtacgtataaataccattcaacactcaaacgacag 33988
Query: 589 aattcgaagctctcgatctgcagaatcttcaggtttcttcagaaccatccaatagatcgt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33987 aattcgaagctctcgatctgcagaatcttcaggtttcttcagaaccatccaatagatcgt 33928
Query: 649 ntatctcttgttcttgcttgctgttacgaggttttttcacgtgattgatcttctcagtca 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33927 ttatctcttgttcttgcttgctgttacgaggttttttcacgtgattgatcttctcagtca 33868
Query: 709 aatactcattgatatcgtcttgtaatncggtcaattgcatccgcagttgcgaaagcgtgg 768
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 33867 aatactcattgatatcgtcttgtaatccggtcaattgcatccgcagttgcgaaagcgtgg 33808
Query: 769 tatattgatcgattcctgtcttactattgaccgttat-aaccttcttttggtcacttagt 827
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct: 33807 tatattgatcgattcctgtcttactattga-cgttatcaaccttctttgggtcactaggt 33749
Query: 828 ttatcgacgtcttgatgcccttg-ttcaatacataatctgaaacaccagtagtt-ttccc 885
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 33748 ttatcgacgtcttgatgcccttgtttcaatacataatctgaagcaccagtagttcttccc 33689
Query: 886 tccg-aacctggtacctggggt 906
|||| | ||||||||||||||
Sbjct: 33688 tccgtagtctggtacctggggt 33667
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6111
Number of Sequences: 1807
Number of extensions: 6111
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)