BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH09FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1518 0.0
>3x_Contig1315
Length = 8846
Score = 1518 bits (766), Expect = 0.0
Identities = 839/853 (98%), Gaps = 8/853 (0%)
Strand = Plus / Minus
Query: 86 tgtgactagtctattttggacagattcttttgaatagtttactagcaagcacattacagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 tgtgactagtctattttggacagattcttttgaatagtttactagcaagcacattacagc 1373
Query: 146 ctttgggacctgatcttcgatcatctctctaacaatggaaaagtatgagacgatcaatct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 ctttgggacctgatcttcgatcatctctctaacaatggaaaagtatgagacgatcaatct 1313
Query: 206 tctaattaattcacattccaactcttcacgttcggtaaattcggtagcagcttcagattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 tctaattaattcacattccaactcttcacgttcggtaaattcggtagcagcttcagattt 1253
Query: 266 ggtatgggcatctgcgctcttgtctttaaaatcttgaatttgcaaattttcgatgtcata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 ggtatgggcatctgcgctcttgtctttaaaatcttgaatttgcaaattttcgatgtcata 1193
Query: 326 agaattatcagagccgttataatcaattctcgaagaaagctttgtattggaactcttttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 agaattatcagagccgttataatcaattctcgaagaaagctttgtattggaactcttttg 1133
Query: 386 ttctttgccgaagaaataattcaagaaggaatcctttgattgcttcatatcattttcttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 ttctttgccgaagaaataattcaagaaggaatcctttgattgcttcatatcattttcttc 1073
Query: 446 ttcagagtcgtgctcgctggttgctgtggaatcagaatcaagcttcaaatcttgttctgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ttcagagtcgtgctcgctggttgctgtggaatcagaatcaagcttcaaatcttgttctgt 1013
Query: 506 ctcatctactgaatcggatttcttcatttcacgttcagcttgttgttgctctaacagtag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ctcatctactgaatcggatttcttcatttcacgttcagcttgttgttgctctaacagtag 953
Query: 566 ctgcttctcatattccctctgtttctgaagtctttccgtttgctttttgttctttctagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctgcttctcatattccctctgtttctgaagtctttccgtttgctttttgttctttctagc 893
Query: 626 ttcaacaatctcggccatggcctctgtagcacttgggaaaatttggatgatttgtgttaa 685
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 892 ttcaacaatctcggccatggcctctgtagcacttggg-aaatttggatgatttgtgttaa 834
Query: 686 tgtacgctttatgaatatcaatcaaactttcgacgtaagaacgagtttggtcccaatctt 745
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 833 tgtacgctttatgaatatcaatcaaactttcgacgtaagaacgag-ttggtcccaatctt 775
Query: 746 tccctcaacagttcactgacaacctcgactagcttactttgtagttttggatattcttgc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 774 tccctcaacagttcactgacaacctcgactagcttactttgtagttttggata-tcttgc 716
Query: 806 tagctca-gagagccacagttgtgacatatcttcatcaattcttcatacaccaattctac 864
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tagctcaggagagccacagttgtgacatatcttcatcaattcttcatacaccaattctac 656
Query: 865 gcancgttgtaaatggatcttaaagtaatctggatttggggtttaacccaaaagatcgga 924
||| ||||| | |||||||| ||||||||| |||||| ||||||| |||| ||||| ||
Sbjct: 655 gcaacgttg-agatggatctagaagtaatct-gatttgtggtttaa-ccaatagatc-ga 600
Query: 925 atgctaattctgg 937
|||||||||||||
Sbjct: 599 atgctaattctgg 587
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7943
Number of Sequences: 1807
Number of extensions: 7943
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)