BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH09RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1507 0.0
>3x_Contig1469
Length = 9240
Score = 1507 bits (760), Expect = 0.0
Identities = 864/887 (97%), Gaps = 9/887 (1%)
Strand = Plus / Minus
Query: 50 atcgaaatcacccttgaagttcttgttcaaaaactcattggcaaatggttgaccaccgta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 atcgaaatcacccttgaagttcttgttcaaaaactcattggcaaatggttgaccaccgta 7296
Query: 110 cttgtaaacacgttgcaagatcttataggcagcagcgtaccccaaaccagggaacaaaga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 cttgtaaacacgttgcaagatcttataggcagcagcgtaccccaaaccagggaacaaaga 7236
Query: 170 caacaaacgtctacccaatggttcagatgcaaagtcacggaaaataacactgttcaattg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 caacaaacgtctacccaatggttcagatgcaaagtcacggaaaataacactgttcaattg 7176
Query: 230 agaggtcgaggcaatcttggtatggtttgacatcaatctcttggaaatagtgtccacagg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agaggtcgaggcaatcttggtatggtttgacatcaatctcttggaaatagtgtccacagg 7116
Query: 290 atggaaaacaccaatttccaagataccagcagaagctgaacctaagacacgggccaaacc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 atggaaaacaccaatttccaagataccagcagaagctgaacctaagacacgggccaaacc 7056
Query: 350 cgattgtttcttatcgttggtagtcatctttttttccagctcttcttagttcaaatggat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7055 cgattgtttcttatcgttggtagtcatctttttttccagctcttcttagttcaaatggat 6996
Query: 410 aagaaattaaaagaaagacccttttcacctagtgagattcctgcttctactcttaataaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6995 aagaaattaaaagaaagacccttttcacctagtgagattcctgcttctactcttaataaa 6936
Query: 470 cgttgttgaaagtttcgcacgagaaagaaaggagccagatgcacgtaaaggcaagataga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6935 cgttgttgaaagtttcgcacgagaaagaaaggagccagatgcacgtaaaggcaagataga 6876
Query: 530 taaaaacagtgatgattcattcttgaaagaatctttgatcgatatctcgaaaggtttttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6875 taaaaacagtgatgattcattcttgaaagaatctttgatcgatatctcgaaaggtttttt 6816
Query: 590 ttaaaagaaaaaagtgtggtttcgttacccggatctggtgatgttttcggtttttcttt- 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6815 ttaaaagaaaaaagtgtggtttcgttacccggatctggtgatgttttcggtttttctttc 6756
Query: 649 aaccgagcanaacgttacaagatgcaggattaggattagggaaacctttaaagacgatga 708
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 6755 aaccgagcaaaacgttacaagatgcaggattagga-taaggaaacctttaaagacgatga 6697
Query: 709 gcagaggcaaggaatagaggccgtatgattcattatttgagcgcttactagtatccagag 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6696 gcagaggcaaggaatagaggccgtatgattcattatttgagcgcttactagtatccagag 6637
Query: 769 gcttagtttgtgggtttaggaaattgtttgctatattttgggtacacctttttttcgagt 828
||||||||||||| || | |||||||||||||||||| |||||| ||||||| |||||
Sbjct: 6636 gcttagtttgtggtaata-gtaattgtttgctatatttt-ggtaca-cttttttccgagt 6580
Query: 829 tttgttgggaatttctctatgagttctgaaaatggttttaaagcgttagaaggaggttaa 888
||||||||| |||||||||||||||||||| |||||| ||| ||||||| ||||| ||||
Sbjct: 6579 tttgttggg-atttctctatgagttctgaagatggttctaatgcgttag-aggagtttaa 6522
Query: 889 gaccaccttgggatggtcttacctttaactttcgggcctataattac 935
||||| ||| |||||||||||| ||||||| || |||||||||||||
Sbjct: 6521 gacca-ctttggatggtcttacgtttaactctc-ggcctataattac 6477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8037
Number of Sequences: 1807
Number of extensions: 8037
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)