BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig993 914 0.0
>3x_Contig993
Length = 4399
Score = 914 bits (461), Expect = 0.0
Identities = 528/545 (96%), Gaps = 4/545 (0%)
Strand = Plus / Plus
Query: 87 ccaacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 ccaacgctatctaactggctagttggcatagattcgatgtatggtacagtttcctcgcat 3652
Query: 147 ggattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 ggattggctgggacaatgtcattgacggaaacagaacaacagattgaattggacgcagaa 3712
Query: 207 gaagctcatcatgaacagcctccaaatatcaagactgtatgggacaatgttactttgcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 gaagctcatcatgaacagcctccaaatatcaagactgtatgggacaatgttactttgcca 3772
Query: 267 atcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 atcactttcactatggacgctcttaaagatattggacaattaacaggagtttcaaattct 3832
Query: 327 ctttctttgttcacgaatatgaaaccaagttggaatctctggtcttctagttcagaaaat 386
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct: 3833 ctttctttgttcacgaatat-aaaccaagttggaatatctggtattctagttcagaaaat 3891
Query: 387 ggcgccggctcggcaaaattagacgataagg-atgaatacagttggcttatatccccgtt 445
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3892 ggcgaaggctcggcaaaattagacgataaggaatgaatacagttggcttatatccccgtt 3951
Query: 446 gaacccctcctttcttccgaaagtttatcaaatgagaaagttctacctccagtttgatga 505
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3952 gaacccctcctttcttccgaaagtttatcaaatgagaaagttctacctcaagtttgatga 4011
Query: 506 ttgg-agccagtataacattctattttggaagttcaaagatgttatagttgctgtaatag 564
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 ttggaagcaagtataaaattctattttggaagttcaaagatgttatagttgctgtaataa 4071
Query: 565 tagatcccagcttcaagaagataagtgaagaaag-ctttttgatgaaattacaggaagaa 623
||||| ||||||| |||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct: 4072 tagatgccagcttaaagaagataagtgaagaaagattttttgatgaattaacaggaagaa 4131
Query: 624 ttgtg 628
|||||
Sbjct: 4132 ttgtg 4136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6793
Number of Sequences: 1807
Number of extensions: 6793
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)