BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZH11RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig887 1481 0.0
>3x_Contig887
Length = 3466
Score = 1481 bits (747), Expect = 0.0
Identities = 786/795 (98%), Gaps = 3/795 (0%)
Strand = Plus / Minus
Query: 44 gcttagaactcaagctcgcagtgattataataagactgtaaagagattcgtcactttcat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2200 gcttagaactcaagctcgcagtgaatataataagactgtaaagagattcgtcactttcat 2141
Query: 104 caagaaatttgacaaaagaatgaaagaaggagcgagaaagcaagaagaagaaaagaagtt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2140 caagaaatttgacaaaagaatgaaagaaggagcgagaaagcaagaagaagaaaagaagtt 2081
Query: 164 aagactccaaaatgccttgaaaagccaaataagcaaggacaaagacgtagaaatgtttta 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2080 aagactccaaaatgccttgaaaagccaaataagcaaggacaaagacgtagaaatgtcaaa 2021
Query: 224 aaaacaggcagattttgctttgcaagactggcaaactattgatcacaaccgattacagga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2020 aaaacaggcagattttgctttgcaagactggcaaactattgatcacaaccgattacagga 1961
Query: 284 gattgacgaatattacctatccaaagatcaaaagaaagcgccaacggatggcgagcatca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1960 gattgacgaatattacctatccaaagatcaaaagaaagcgccaacggatggcgagcatca 1901
Query: 344 tatcaataatgaccttgaggatgttctaatctatgaatgttttatctgtaacaagaattt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1900 tatcaataatgaccttgaggatgttctaatctatgaatgttttatctgtaacaagaattt 1841
Query: 404 taagtccgagaaacaactagagaatcataccaatacaaaactgcacaggaaactgctgcg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 taagtccgagaaacaactagagaatcataccaatacaaaactgcacaggaaactgctgcg 1781
Query: 464 tcaactacaatgggaaatgaaacaggagagtatcgcacttgggctagacaacatatctga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 tcaactacaatgggaaatgaaacaggagagtatcgcacttgggctagacaacatatctga 1721
Query: 524 tgtggatgaattcaagtcagcatcagaaacctattcagataatgaaactagtggaagcat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 tgtggatgaattcaagtcagcatcagaaacctattcagataatgaaactagtggaagcat 1661
Query: 584 acatctatcctcccctgatgaatttgaagaaatcgaggaaagcgacacattttcattttc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 acatctatcctcccctgatgaatttgaagaaatcgaggaaagcgacacattttcattttc 1601
Query: 644 tgatatagatgcggaattgaaaaaaattgacgaagatcttgacgcattgaactcaactga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tgatatagatgcggaattgaaaaaaattgacgaagatcttgacgcattgaactcaactga 1541
Query: 704 gtcgaatataaacaattttatgttagaaacttctgaagatgataaacagatttcagatgt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 gtcgaatataaacaattttatgttagaaacttctgaagatgataaacagatttcagatgt 1481
Query: 764 ttgatatatcattgacgatgaagtagatgaaaat-tatcacaaaa-gtagaaac-aataa 820
| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 1480 tgaatatatcattgacgatgaagtagatgaaaatatatcacaaaaggtagaaacaaataa 1421
Query: 821 tgctactcaagtttc 835
|||||||||||||||
Sbjct: 1420 tgctactcaagtttc 1406
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,208
Number of Sequences: 1807
Number of extensions: 10208
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)