BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA01FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1304 0.0
>3x_Contig1489
Length = 10722
Score = 1304 bits (658), Expect = 0.0
Identities = 709/718 (98%), Gaps = 6/718 (0%)
Strand = Plus / Minus
Query: 87 ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 2248
Query: 147 ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 2188
Query: 207 aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 2128
Query: 267 ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 2068
Query: 327 agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 2008
Query: 387 agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 1948
Query: 447 tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 1888
Query: 507 gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 1828
Query: 567 tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 1768
Query: 627 attagtcactgagttactgaaatattataaggcctattactccaaagcttatccttctag 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1767 attagtcactgagttactgaaatattataaggcctattactccaaagcttatcc-tctag 1709
Query: 687 tggacaagggaaattctttccaaaaccatccacaatggatttgataaatatgtgaagacc 746
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1708 tggacaa-ggaaattctttccaaaaccatccacaatggatttgataaatatgtgaggacc 1650
Query: 747 ggtatcacagtaatccccaattggaggaaagcggggaaaatgtacttccgttgtgttt 804
|||||||||| ||||||| || | |||||||| |||||||||||| ||||||||||||
Sbjct: 1649 ggtatcacag-aatcccc-atcgaaggaaagc-gggaaaatgtac-tccgttgtgttt 1596
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8445
Number of Sequences: 1807
Number of extensions: 8445
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)