BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA02FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1396 0.0
>3x_Contig1301
Length = 6951
Score = 1396 bits (704), Expect = 0.0
Identities = 770/788 (97%), Gaps = 3/788 (0%)
Strand = Plus / Plus
Query: 88 ctaaccttcaaatacggggaatacagaatagtttgctacccggttaacgttaatgccagg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 ctaaccttcaaatacggggaatacagaatagtttgctacccggttaacgttaatgccagg 1999
Query: 148 tactacgccagaaattcgttcaattttaattttgttttcgttttcccttatgattgcgca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 tactacgccagaaattcgttcaattttaattttgttttcgttttcccttatgattgcgca 2059
Query: 208 acttcaccattttatctttctatagctagattgggaaagatgttcaaagtcttagaagaa 267
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 acttcaccatacgagccagctatagctagattgggaaagatgttcaaagtcttagaagaa 2119
Query: 268 caatcgcaaatactttccaaatctgagcagaacccagtgtattttcaattgaagtcaaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 caatcgcaaatactttccaaatctgagcagaacccagtgtattttcaattgaagtcaaac 2179
Query: 328 gattctaatgctgctgatcagtctacagagatgggatctataacaatatcagaacatacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 gattctaatgctgctgatcagtctacagagatgggatctataacaatatcagaacatacc 2239
Query: 388 gatattaaatcgacaggggacgatggggagaaatatttagaaatcataaaagaactagct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 gatattaaatcgacaggggacgatggggagaaatatttagaaatcataaaagaactagct 2299
Query: 448 aaaaaccaaaagagtttgatcattgaagatcttttgatgaagttgtttcttgatttgaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 aaaaaccaaaagagtttgatcattgaagatcttttgatgaagttgtttcttgatttgaac 2359
Query: 508 aattattccgagtgtttgatcccaatcgatgaaggaaattctattgacattaaactcttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 aattattccgagtgtttgatcccaatcgatgaaggaaattctattgacattaaactcttt 2419
Query: 568 cccgttagaactcctccaagttcgaacatctcggtagaagacgtaccgatagctgtagta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 cccgttagaactcctccaagttcgaacatctcggtagaagacgtaccgatagctgtagta 2479
Query: 628 aacctctctgatataatagatgtgaattgggatccaacgatggtcaaaattgtaccgtat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 aacctctctgatataatagatgtgaattgggatccaacgatggtcaaaattgtaccgtat 2539
Query: 688 atcaatgggaataatagcgtagctcaaattgcagtcagtgcttgaagtgatgttgaaata 747
|||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 2540 atcaatggaattaatagcgtagctcaaattgcagtcagtgctcgaagtgatgttgaatta 2599
Query: 748 gttcaagaatgcattaaacatttgatgtactacaactgtgttaatctctccgatattttt 807
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2600 gttcaagaatgcattaaacatttgatgtactacaactgtgttattctctccgatattttt 2659
Query: 808 c-atttagcaacatttaggctcccactagtgagattcataa-tttttaacgaattc-gct 864
| ||||||||||||||| ||||||||||||||||||||||| || ||||||||| | |||
Sbjct: 2660 caatttagcaacatttatgctcccactagtgagattcataacttcttaacgaatccggct 2719
Query: 865 gtagccaa 872
||||||||
Sbjct: 2720 gtagccaa 2727
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7348
Number of Sequences: 1807
Number of extensions: 7348
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)