BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1745 1463 0.0
3x_Contig1806 1239 0.0
3x_Contig883 759 0.0
>3x_Contig1745
Length = 19830
Score = 1463 bits (738), Expect = 0.0
Identities = 819/842 (97%), Gaps = 3/842 (0%)
Strand = Plus / Plus
Query: 47 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 4402
Query: 107 tgttccataacagagatgctgaagcaagagcaatcttaaataaatatcacgcaggaaata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4403 tgttccataacagagatgctgaagcaagagcaatcttaaataaatatcacgcaggaaata 4462
Query: 167 atgaggaatacgcaggtttgatcgattttgagctagcagaaattaaattggctattgaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 atgaggaatacgcaggtttgatcgattttgagctagcagaaattaaattggctattgaac 4522
Query: 227 aagaaaaagcctcccagtctaccaagttctctgatttcattaaaacttctggtaatcgcc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 aagaaaaagcctcccagtctaccaagttctctgatttcattaaaacttctggtaatcgcc 4582
Query: 287 ataggttgtggattttgatctggactgcaattttcacacaactttccggaaacggtttag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 ataggttgtggattttgatctggactgcaattttcacacaactttccggaaacggtttag 4642
Query: 347 tgtcttactatctatcaaaagtcttcaactctattggtataactgatcctgatgatcaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 tgtcttactatctatcaaaagtcttcaactctattggtataactgatcctgatgatcaat 4702
Query: 407 tgaaatggaatggttggctaatgctttacaactggttatgttcactaattttaataggtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 tgaaatggaatggttggctaatgctttacaactggttatgttcactaattttaataggtt 4762
Query: 467 acatcgccccattcttcaaaagaagacagttatttttgatatctttagtttccatgactt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 acatcgccccattcttcaaaagaagacagttatttttgatatctttagtttccatgactt 4822
Query: 527 cttgctacgttgtttggacagcattgtctgcagaaaaccaaaagcgcaatttcgaggata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 cttgctacgttgtttggacagcattgtctgcagaaaaccaaaagcgcaatttcgaggata 4882
Query: 587 agtctctagcaaatggtgtcttggcaatgatcttcttatattatctttcttacaacttcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 agtctctagcaaatggtgtcttggcaatgatcttcttatattatctttcttacaacttcg 4942
Query: 647 gattcaacggtttcccaaatctttacacaactgaaatattaccttatactttgagagggt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 gattcaacggtttcccaaatctttacacaactgaaatattaccttatactttgagaggta 5002
Query: 707 aagggcttacaattttccagtttcccattagcatttcagttatatttaatgggtttgtca 766
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 5003 aagggcttacaattttccagttggccattagcatttcagttatattcaatgggtttgtca 5062
Query: 767 atccagttgcaatggatgcttttggattggaaatactacattttttattggtgtttctta 826
|||||||||||||||||||| || || |||||||||||||| |||||||| |||||||||
Sbjct: 5063 atccagttgcaatggatgctatt-gaatggaaatactacatcttttattgttgtttctta 5121
Query: 827 cctgtggaaaatcgtggttggtaatttaacttttcttggaaacttcaggaaaatttttgg 886
|||| | | ||||| ||| || |||| || |||| | ||||||||||||| || |||||
Sbjct: 5122 gctgttg-agatcgttgtttgttatttcac-tttcgttgaaacttcaggaagatctttgg 5179
Query: 887 aa 888
||
Sbjct: 5180 aa 5181
>3x_Contig1806
Length = 53694
Score = 1239 bits (625), Expect = 0.0
Identities = 746/785 (95%), Gaps = 1/785 (0%)
Strand = Plus / Minus
Query: 47 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47473 tgtttccactcgttcagctcgtcgcgctatacaaatgcccagaatctccaagatatttgg 47414
Query: 107 tgttccataacagagatgctgaagcaagagcaatcttaaataaatatcacgcaggaaata 166
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 47413 tgttccataatagagatgctgaagcaagagcaatcttgaataaatatcacgcaggaaata 47354
Query: 167 atgaggaatacgcaggtttgatcgattttgagctagcagaaattaaattggctattgaac 226
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 47353 atgaggaatacgcaggtttgatcgattttgagctggcagaaattaaattggctattgaac 47294
Query: 227 aagaaaaagcctcccagtctaccaagttctctgatttcattaaaacttctggtaatcgcc 286
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 47293 aagaaaaagcttcccaatctaccaagttctctgatttcattaaaacttccggtaatcgtc 47234
Query: 287 ataggttgtggattttgatctggactgcaattttcacacaactttccggaaacggtttag 346
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 47233 atagattgtggattttgatctggactgcaattttcacacaactttccggaaatggattag 47174
Query: 347 tgtcttactatctatcaaaagtcttcaactctattggtataactgatcctgatgatcaat 406
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 47173 tgtcttactatttatcaaaagtcttcaactccattggtataactgatcctgatgatcaat 47114
Query: 407 tgaaatggaatggttggctaatgctttacaactggttatgttcactaattttaataggtt 466
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47113 tgaaatggaatggttggttaatgctttacaactggttatgttcactaattttaataggtt 47054
Query: 467 acatcgccccattcttcaaaagaagacagttatttttgatatctttagtttccatgactt 526
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 47053 acatcgccccattcttcaaaagaagacaattattcttgatatccttagtttcaatgactt 46994
Query: 527 cttgctacgttgtttggacagcattgtctgcagaaaaccaaaagcgcaatttcgaggata 586
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 46993 cttgttacgttgtgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggata 46934
Query: 587 agtctctagcaaatggtgtcttggcaatgatcttcttatattatctttcttacaacttcg 646
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46933 agactctagcaaatggagtcttggcaatgatcttcttatattatctttcttacaacttcg 46874
Query: 647 gattcaacggtttcccaaatctttacacaactgaaatattaccttatactttgagagggt 706
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 46873 ggttcaacggtttcccaaatctttacacaactgaaatattaccttacactttgagaggta 46814
Query: 707 aagggcttacaattttccagtttcccattagcatttcagttatatttaatgggtttgtca 766
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 46813 aagggcttacaattttccagttagccattagtatttcagttatattcaatgggtttgtca 46754
Query: 767 atccagttgcaatggatgcttttggattggaaatactacattttttattggtgtttctta 826
||||| |||||||||||||| || || |||||||||||||| |||||||| || ||||||
Sbjct: 46753 atccaattgcaatggatgctatt-gaatggaaatactacatcttttattgctgcttctta 46695
Query: 827 cctgt 831
||||
Sbjct: 46694 tctgt 46690
>3x_Contig883
Length = 3346
Score = 759 bits (383), Expect = 0.0
Identities = 663/755 (87%), Gaps = 1/755 (0%)
Strand = Plus / Plus
Query: 72 gctatacaaatgcccagaatctccaagatatttggtgttccataacagagatgctgaagc 131
||||||||| ||||||||||||||||||||| | || ||||||||||||||| | |||||
Sbjct: 170 gctatacaactgcccagaatctccaagatatcttgttttccataacagagattccgaagc 229
Query: 132 aagagcaatcttaaataaatatcacgcaggaaataatgaggaatacgcaggtttgatcga 191
||| || || || || ||||| || ||||| |||||||||||||||| || ||||||||
Sbjct: 230 aagggccattttgaacaaataccatgcaggtgataatgaggaatacgcgggcttgatcga 289
Query: 192 ttttgagctagcagaaattaaattggctattgaacaagaaaaagcctcccagtctaccaa 251
|||||| | |||||||||||| |||||||||||||||||||||| || || |||||||
Sbjct: 290 ttttgaattggcagaaattaaactggctattgaacaagaaaaagcttctcaagctaccaa 349
Query: 252 gttctctgatttcattaaaacttctggtaatcgccataggttgtggattttgatctggac 311
|||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 350 cttctctgatttctttaaaacctccggtaatcgccatagattgtggattttgatctggac 409
Query: 312 tgcaattttcacacaactttccggaaacggtttagtgtcttactatctatcaaaagtctt 371
||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 410 tgcaattttcacacaactttccggaaatggattggtgtcttactatctatccaaagtctt 469
Query: 372 caactctattggtataactgatcctgatgatcaattgaaatggaatggttggctaatgct 431
||| || |||||||| || ||||||||||| ||||| | |||||||||||| |||||||
Sbjct: 470 caattcgattggtattacagatcctgatgagcaattagagtggaatggttggttaatgct 529
Query: 432 ttacaactggttatgttcactaattttaataggttacatcgccccattcttcaaaagaag 491
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 530 ttacaactggttatgttcattaattttgatgagttacatcgccccattcttcaaaagaag 589
Query: 492 acagttatttttgatatctttagtttccatgacttcttgctacgttgtttggacagcatt 551
|| |||||||||||||| || ||| ||| | | ||||||| |||| |||||||| ||
Sbjct: 590 gcaattatttttgatatccttgacttcaatggcctgttgctacattgtctggacagcttt 649
Query: 552 gtctgcagaaaaccaaaagcgcaatttcgaggataagtctctagcaaatggtgtcttggc 611
||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 650 atctgctgaaaaccaaaaacgtaatttcgaggataaatctctagcaaatggtgtcttggc 709
Query: 612 aatgatcttcttatattatctttcttacaacttcggattcaacggtttcccaaatcttta 671
||||||||||||||||||||||||||||||||| ||||||||||||| |||| || ||
Sbjct: 710 aatgatcttcttatattatctttcttacaactttggattcaacggttacccattcctcta 769
Query: 672 cacaactgaaatattaccttatactttgagagggtaagggcttacaattttccagtttcc 731
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct: 770 cacaactgaaattttaccttacactttgagaggtaaagggcttacaattttccagttggc 829
Query: 732 cattagcatttcagttatatttaatgggtttgtcaatccagttgcaatggatgcttttgg 791
|||||| || ||||||| || || |||||||| || || |||||||||||||| || |
Sbjct: 830 cattagtcttgcagttattttcaacgggtttgttaactcaattgcaatggatgctatt-g 888
Query: 792 attggaaatactacattttttattggtgtttctta 826
| |||||||||||||| |||||||| |||||||||
Sbjct: 889 aatggaaatactacatcttttattgttgtttctta 923
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7975
Number of Sequences: 1807
Number of extensions: 7975
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 3
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)