BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA03FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1223 0.0
>3x_Contig1428
Length = 9146
Score = 1223 bits (617), Expect = 0.0
Identities = 786/833 (94%), Gaps = 7/833 (0%)
Strand = Plus / Minus
Query: 90 ccaagtggatcaggtagttaag-tcccaatcatatatcaagctagtggctgacgctctta 148
||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct: 7714 ccaagtggatcagttagttaagctcccaatcatctatcaagctagtggctagcgctctta 7655
Query: 149 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 7595
Query: 209 gataaacttatcgaacgatacggcggaaaacttttcaataactatggaacctgtattcta 268
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 7535
Query: 269 gagtacaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 328
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 7475
Query: 329 ccttactgctggtaatgggaagttcgtaaatgcaagaattgacttaaaaaccaatatacc 388
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7474 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 7415
Query: 389 acaggggttaataactggagaagaacaagatattcctacaaaagacggctccgagttttc 448
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 7414 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 7355
Query: 449 tttgaaatttgatcatgaactggattctgaacatggaaatgatcccgagcgtagtgctga 508
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7354 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 7295
Query: 509 ttttggtcatttcaaatgcctgacatatagtagtagactcgaggaaggggagatgtataa 568
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7294 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 7235
Query: 569 tgtttctgaggagagagtcatgacgtataaagaaatttggcacaccattgacccaataag 628
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7234 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 7175
Query: 629 atcttcaacaggatatctagtacccgtagagtgtgatatatatgatggatctagtgacac 688
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 7174 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 7115
Query: 689 gcatattgtgtgggagctgtcagacgacgccaagaataatgcacgcgggagattgatcag 748
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7114 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 7055
Query: 749 tataagacaagttagtcacggaa-tgaggtatataacggattgttgcagtgcattagaac 807
|||| || |||||||||| |||| || || ||||||||||||||| ||||||||||||||
Sbjct: 7054 tataggaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 6995
Query: 808 aggaaataactc-ggggtataccaaatac-gatctcatgtggaacaca-ttttgggcagt 864
| |||||||| | |||||||| ||||| | |||||||||||| | | |||||||||||
Sbjct: 6994 gtggaataactcagtggtatacc-aatacggttctcatgtggaagaaatttttgggcagt 6936
Query: 865 ttattaaggaattgagcactcacaattcccaatttcca-ggcaaaaaacatat 916
|||| |||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 6935 ttatgaagggattgagcactcacaattcccaatttccatggcaaagaacatat 6883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5366
Number of Sequences: 1807
Number of extensions: 5366
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)