BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA04RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1342 0.0
>3x_Contig1788
Length = 28493
Score = 1342 bits (677), Expect = 0.0
Identities = 682/684 (99%)
Strand = Plus / Minus
Query: 44 gctttagtgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5838 gctttagtgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaag 5779
Query: 104 ctaacgataaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5778 ctaacgataaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttc 5719
Query: 164 ccatattatgttcataccattattgctggattagatgaagaaggtaagggggccgtatac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5718 ccatattatgttcataccattattgctggattagatgaagaaggtaagggggccgtatac 5659
Query: 224 tctttcgatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5658 tctttcgatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcc 5599
Query: 284 tccttaatcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5598 tccttaatcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgat 5539
Query: 344 tctaatggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaatta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5538 tctaatggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaatta 5479
Query: 404 gtaagagatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5478 gtaagagatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagag 5419
Query: 464 attttgattgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5418 attttgattgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaa 5359
Query: 524 gttacactcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5358 gttacactcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaa 5299
Query: 584 tatatatatatatatagtaaaatataagatagtgttntattcgcttcgatcaatctgaag 643
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5298 tatatatatatatatagtaaaatataagatagtgttttattcgcttcgatcaatctgaag 5239
Query: 644 aaagctttcgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattct 703
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 aaagcttccgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattct 5179
Query: 704 aaatctccaccgagtttgataacc 727
||||||||||||||||||||||||
Sbjct: 5178 aaatctccaccgagtttgataacc 5155
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,568
Number of Sequences: 1807
Number of extensions: 12568
Number of successful extensions: 1388
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)