BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig908 1590 0.0
>3x_Contig908
Length = 2758
Score = 1590 bits (802), Expect = 0.0
Identities = 838/847 (98%), Gaps = 3/847 (0%)
Strand = Plus / Plus
Query: 86 tgaactatgaattcccatacgtagaagggaaaacgataagggatgttctaccaaacccac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tgaactatgaattcccatacgtagaagggaaaacgataagggatgttctaccaaacccac 1213
Query: 146 aattggaagatctatatgatgtggttacatcttgcctaaagtggaatccaagtgaaaggg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 aattggaagatctatatgatgtggttacatcttgcctaaagtggaatccaagtgaaaggg 1273
Query: 206 ctactgcaaacgaaatatgtgcattgccatacttcaaggaatacgtgatgagagaagcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 ctactgcaaacgaaatatgtgcattgccatacttcaaggaatacgtgatgagagaagcat 1333
Query: 266 ctttggcaaagacaaataacggaaccgcatccaaaaataaggataatacagctttggcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ctttggcaaagacaaataacggaaccgcatccaaaaataaggataatacagctttggcaa 1393
Query: 326 ataaacttgcagcaaatccatcaatatcaaaccaatggagtcgtattctttctggactac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 ataaacttgcagcaaatccatcaatatcaaaccaatggagtcgtattctttctggactac 1453
Query: 386 cacataacccggaattgggcattgttcctagttttaactctccacagaagttaccaaagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 cacataacccggaattgggcattgttcctagttttaactctccacagaagttaccaaagg 1513
Query: 446 ttcaaaagaacaatcaaatgaattgtgtaacagataaaagccaacagcaaccgcgaagag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ttcaaaagaacaatcaaatgaattgtgtaacagataaaagccaacagcaaccgcgaagag 1573
Query: 506 gaggagttgcctcatggttcaaattttccacgcagaaaaaccacgttaacatcaatccaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 gaggagttgcctcatggttcaaattttccacgcagaaaaaccacgttaacatcaatccaa 1633
Query: 566 atacaaacaatgatgagaaaatccttactagtgttaacacgaatacaaatagccagaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 atacaaacaatgatgagaaaatccttactagtgttaacacgaatacaaatagccagaaga 1693
Query: 626 atcaaggaattgtagaaaaaaaacagcaggaacaacaggtaaatgctcacaacgagaggc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 atcaaggaattgtagaaaaaaaacagcaggaacaacaggtaaatgctcacaacgagaggc 1753
Query: 686 tagatagctctacaaacgctaatggtaacagtattcctgatataaatctcataggacatg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 tagatagctctacaaacgctaatggtaacagtattcctgatataaatctcataggacatg 1813
Query: 746 ccaacaaatgat-atgangtattcactattgagctggatgatagcatggagactatgaca 804
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 ccaac-aatgataatgaggtattcactattgagctggatgatagcatggagactatgaca 1872
Query: 805 ggatctgatcaaatttctaaggaattaaatgacnaaatagagctttatcagaacaccaca 864
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 1873 ggatctgatcaaatttctaaggaattaaatgacaaaatagagctttatcaagacaccaca 1932
Query: 865 natcagatgaacccaccaactcttggatgttgatgacgatgaccatgaacatgattcgat 924
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 1933 aatcagatgaacccaccaactc-tggatgttgatgacgatgacgatgaacatgattcgat 1991
Query: 925 tgacatg 931
|||||||
Sbjct: 1992 tgacatg 1998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6721
Number of Sequences: 1807
Number of extensions: 6721
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)