BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1552 1677 0.0
>3x_Contig1552
Length = 11268
Score = 1677 bits (846), Expect = 0.0
Identities = 872/879 (99%), Gaps = 2/879 (0%)
Strand = Plus / Plus
Query: 53 ctttacaatcttacaaataccaaggaagcactgcatgctgtgcagcaattgtcattaaac 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9423 ctttacaatcttacaaataccaaggaagcactgcatgctgtgcagcaattgtcattaaac 9482
Query: 113 ggaggcattggcagagaaaacttgttaacagagattcagtcgttaagagaagaaatttct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9483 ggaggcattggcagagaaaacttgttaacagagattcagtcgttaagagaagaaatttct 9542
Query: 173 gtgttaaaattgtcggcagaaaaaccaaaccaactagaacctgagaatctattaattaac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9543 gtgttaaaattgtcggcagaaaaaccaaaccaactagaacctgagaatctattaattaac 9602
Query: 233 acagcttctacatcgttgccccttctcgaaactactttggagttatatacaagggctcaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9603 acagcttctacatcgttgccccttctcgaaactactttggagttatatacaagggctcaa 9662
Query: 293 ttaggagattttttctcatctaaactgtctacgtaatgtgtagaacgaaatggtccagtt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9663 ttaggagattttttctcatctaaactgtctacgtaatgtgtagaacgaaatggtccagtt 9722
Query: 353 gaatacgctaaataattgcttgcatccaccttttcaaaccttaattaagccattattaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9723 gaatacgctaaataattgcttgcatccaccttttcaaaccttaattaagccattattaaa 9782
Query: 413 gcaagatgtttcctgaactctttaattagaacatcattttcttgcttagtaccaatggtg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9783 gcaagatgtttcctgaactctttaattagaacatcattttcttgcttagtaccaatggtg 9842
Query: 473 attcttaaaccacctgcgcagccaggctcattacctctatatcttgttataacagctgat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9843 attcttaaaccacctgcgcagccaggctcattacctctatatcttgttataacagctgat 9902
Query: 533 tcaacggcaagcctttcatatagcttcttagtcaaagcgttgtctccattgttgatgttt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9903 tcaacggcaagcctttcatatagcttcttagtcaaagcgttgtctccattgttgatgttt 9962
Query: 593 aataagatgaaattagcgtctaggccacccaattgggaaacatatggagaagaagtcaac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9963 aataagatgaaattagcgtctaggccacccaattgggaaacatatggagaagaagtcaac 10022
Query: 653 tccttcaacactctcaattnttcctttttaactgtggcagcattctcttccatcaatttc 712
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 10023 tccttcaacactctcaatttttcctttttaactgtggcagcattctcttccatcaatttc 10082
Query: 713 aagtttttttggttgtactgctttcaaagcaacttctgcagtcgagcaagatatattata 772
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10083 aag-ttttttggttgtactgctttcaaagcaacttctgcagtcgagcaagaaatattata 10141
Query: 773 nggagccttcatcgaattcaagactcttgacatagctttagatgtatacgtaactcctag 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10142 aggagccttcatcgaattcaagactcttgacatagctttagatgtatacgtaactcctag 10201
Query: 833 tctgattccagct-ggccaaatgacttagaaggagtttgtaaaacagcaatattttcgta 891
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10202 tctgattccagctaggccaaatgacttagaaagagtttgtaaaacagcaatattttcgta 10261
Query: 892 ctttgttgctagcgntgccaaggaccccttatcagaacc 930
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 10262 ctttgttgctagcggtgccaaggaccccttatcagaacc 10300
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6835
Number of Sequences: 1807
Number of extensions: 6835
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)