BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA06FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1102 0.0
>3x_Contig1400
Length = 8536
Score = 1102 bits (556), Expect = 0.0
Identities = 633/655 (96%), Gaps = 3/655 (0%)
Strand = Plus / Minus
Query: 270 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 329
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 330 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 390 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 450 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 510 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 570 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 630 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 8117
Query: 690 atagacttgtaacatttgggaacccatataaaa-ttaattcaaatacaaaggttgcagaa 748
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 8116 atagacttgtaacatttgggaa-ccatataaaatttaattcaaatacaaaggttgcagaa 8058
Query: 749 gccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatct 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8057 gccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatcc 7998
Query: 809 ctaatagctgccttccggtttctttttcacttttcgttattggtttatgccatatccata 868
||||||||||||||| || |||||||||| |||||||||| || |||| |||||||
Sbjct: 7997 taaatagctgccttccgtttcctttttcactcttcgttattgtttcatgcataatccata 7938
Query: 869 c-ttttatgttcgctcgggacttttatgccattcancattcgttttgagaaaaaa 922
| ||| |||||||||||| |||| |||| |||||| |||||||||||||||||
Sbjct: 7937 catttcatgttcgctcggaacttctatggcattcagatttcgttttgagaaaaaa 7883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6508
Number of Sequences: 1807
Number of extensions: 6508
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)