BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1516 0.0
>3x_Contig1709
Length = 16948
Score = 1516 bits (765), Expect = 0.0
Identities = 784/789 (99%), Gaps = 1/789 (0%)
Strand = Plus / Minus
Query: 44 cttcagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8823 cttcagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttg 8764
Query: 104 gatgaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8763 gatgaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacct 8704
Query: 164 gcccttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgttttgcat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8703 gcccttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcat 8644
Query: 224 atttttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8643 atttttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttg 8584
Query: 284 tttcaatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8583 tttcaatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattct 8524
Query: 344 catcaagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8523 catcaagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccat 8464
Query: 404 acgattgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 acgattgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgc 8404
Query: 464 tagatctatgggttcttgaaaccgaatgaccacccaattgggcaagtttatccaacggaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 tagatctatgggttcttgaaaccgaatgaccacccaattgggcaagtttatccaacggaa 8344
Query: 524 tctgatgctcagtttgtagccaagaaatagcattcgctgaatctttggccaacttctcca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 tctgatgctcagtttgtagccaagaaatagcattcgctgaatctttggccaacttctcca 8284
Query: 584 tcaatgtcacaatacctttccctctagcagatttgatcgtatcatctgcaaataactccg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 tcaatgtcacaatacctttccctctagcagatttgatcgtatcatctgcaaataactccg 8224
Query: 644 gattatcaattatcttaagtttttcttgagtgtcggtaccagcaccattaataccgcttg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 gattatcaattatcttaagtttttcttgagtgtcggtaccagcaccattaataccgcttg 8164
Query: 704 acgccttgatcgaattaccaccaatgctttctgtcttttccaataaaactattggaatat 763
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8163 acgccttgatcgaattaccaccaatgcttcctgtcttttccaataaaactattggaatat 8104
Query: 764 taaaacttcactagttgggtagaggtcgttaatccagctaatcctgatcctataactaca 823
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 t-aaacttcactagttgggtagaggtcgttaatccagctaatcctgatcctataactaca 8045
Query: 824 acgggttta 832
|||||||||
Sbjct: 8044 acgggttta 8036
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7443
Number of Sequences: 1807
Number of extensions: 7443
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)