BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA07RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1267 0.0
>3x_Contig1774
Length = 27771
Score = 1267 bits (639), Expect = 0.0
Identities = 676/683 (98%), Gaps = 4/683 (0%)
Strand = Plus / Plus
Query: 43 gcttttttttaattcattttcactgagaagctgctttggggcaggtactaattttcatca 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6611 gcttttttttaattcattttcactgagaagctgctttggggcaggtactaattttcatca 6670
Query: 103 tttaaaaaaaaaaaaaaaaaggtttataatagcatccaacatgtattcaaatgcaaaaca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6671 tttaaaaaaaaaaaaaaaaaggtttataatagcatccaacatgtattcaaatgcaaaaca 6730
Query: 163 tcggtcaaaaatgtaaaccacaaggaaaacacaggcactagaggctacaaaactggtgta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6731 tcggtcaaaaatgtaaaccacaaggaaaacacaggcactagaggctacaaaactggtgta 6790
Query: 223 taactatccgtcatcagttatatttgtgatacataccatggaaaacccgtatgagaaagt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6791 taactatccgtcatcagttatatttgtgatacataccatggaaaacccgtatgagaaagt 6850
Query: 283 tcaaagcaatattctggctagaatcattggcaatgtcgaaaggttgaaccagagtgtagt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6851 tcaaagcaatattctggctagaatcattggcaatgtcgaaaggttgaaccagagtgtagt 6910
Query: 343 gatactaaaccaagagcttcgaagggtaaacaccaagaataagaatttggaactgatgtc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6911 gatactaaaccaagagcttcgaagggtaaacaccaagaataagaatttggaactgatgtc 6970
Query: 403 acaaatgtgtgagaactatagagaatctgttgatttccagttgcaggcaacttccaagaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6971 acaaatgtgtgagaactatagagaatctgttgatttccagttgcaggcaacttccaagaa 7030
Query: 463 acaggacccattgtaaggtctcacatatattctaacgagaagaatttattaaaaaaaaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7031 acaggacccattgtaaggtctcacatatattctaacgagaagaatttattaaaaaaaaaa 7090
Query: 523 agcagttacttaagtgatgtagtatgtacgtatatacatacgcctttttatagtcggttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7091 agcagttacttaagtgatgtagtatgtacgtatatacatacgcctttttatagtcggttt 7150
Query: 583 caggaccgtactgattctaatttacagataataatggattaattttttttgttcatgttc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7151 caggaccgtactgattctaatttacagataataatggattaattttttttgttcatgttc 7210
Query: 643 agagagttttaaccggtgcaatttttgtttgcggattgtgttccaactttgtagggaccc 702
|| |||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||
Sbjct: 7211 agtgagttttaaccggtgcaa-ttttgtctgcggattgtgttccaac-ttgtaggga-cc 7267
Query: 703 ttaatttgggcaaaaggttgtat 725
||| ||| |||||||||||||||
Sbjct: 7268 ttagttt-ggcaaaaggttgtat 7289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,433
Number of Sequences: 1807
Number of extensions: 27433
Number of successful extensions: 2904
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)