BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA08FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1526 0.0
>3x_Contig1803
Length = 52241
Score = 1526 bits (770), Expect = 0.0
Identities = 834/849 (98%), Gaps = 5/849 (0%)
Strand = Plus / Minus
Query: 83 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48818 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 48759
Query: 143 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48758 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 48699
Query: 203 ctgttcttttcttgataagacacaaggtagaaacctgacgataattattaaagtccttta 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48698 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 48639
Query: 263 ccaactatagacagatgggtactctcacc-tcacctacggtttactgcaaattagagcat 321
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 48638 ccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattagagcat 48579
Query: 322 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48578 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 48519
Query: 382 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48518 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 48459
Query: 442 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48458 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 48399
Query: 502 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48398 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 48339
Query: 562 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48338 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 48279
Query: 622 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48278 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 48219
Query: 682 gctattggagtccatggtgctcaattccacgaatttattatcatacctgcattgtgagtg 741
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 48218 gctattggagtccatggtgctcaattccacgaatttattatcatacctccattgtgagtg 48159
Query: 742 tgagccacatattatgatcactagacattaattatttaatatttattaacagtttttaag 801
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 48158 tgagcaacatattatgatcactagacattaattatttaataattattaacagtttttaag 48099
Query: 802 tggagttcttacttatgtcttcttttctaaattttgnttccgaacatctctttctggtga 861
|||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct: 48098 tggagttctttcttatgtcttcttttctaaattttgttt-cgaacatct-tttctggtga 48041
Query: 862 tttaacacaagcttcacagttctcggttaatcccttattattccttccgggggctggtta 921
||||||||||||| ||||| |||||||||||||||||||||||||| | | |||| ||||
Sbjct: 48040 tttaacacaagctacacag-tctcggttaatcccttattattcctt-ctgtggcttgtta 47983
Query: 922 tttactctc 930
|||||||||
Sbjct: 47982 tttactctc 47974
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5665
Number of Sequences: 1807
Number of extensions: 5665
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)