BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 1449 0.0
>3x_Contig1100
Length = 4703
Score = 1449 bits (731), Expect = 0.0
Identities = 827/850 (97%), Gaps = 7/850 (0%)
Strand = Plus / Minus
Query: 45 cttgcgtttttttgtcctgttcttttctgataatttattgaatacgtcctgtgaaaagtt 104
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1529 cttgcgtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagtt 1470
Query: 105 ataagtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 ataagtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctga 1410
Query: 165 atcatttgcttcttcatggaccaaaacagagctcaattccgagagaactcccatcanctc 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1409 atcatttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatcc 1350
Query: 225 ttctagtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcact 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 ttctagtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcact 1290
Query: 285 tttccacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgctt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 tttccacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgctt 1230
Query: 345 ccgttttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 ccgttttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatg 1170
Query: 405 gatctggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 gatctggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtca 1110
Query: 465 accgtacgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 accgtacgataaacctggacaccactgtataaataaaagtcctaacatattgaaaatttg 1050
Query: 525 gcctatgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccga-cagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1049 gcctatgagaactcagaaggagtgcatgattaacgcacttgtatgcagaaaccgagcagg 990
Query: 584 tgaactctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgaactctggaaactagaagtatttagaggcacaaatcagtattgagatgcccactgaac 930
Query: 644 ttatcacttatgagcagaacttctcttctggtgtagatgctgaaaacgactaccctcctt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ttatcacttatgagcagaacttctcttctggtgtagatgctgaaaacgactaccctcctt 870
Query: 704 tggattccggcatgggcagtttccaagtttctgaacttgaacgtcaaggtgattcaccat 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tggattccggcatgggcagtttccaagtttctgaacttgaacgtcaaggtgattcacata 810
Query: 764 agcgtttcaatgatgagatatcgggagctccgagacgaaactcttaaccgccagagagga 823
|||||| |||||||||||||| |||||||||||||||||||||||| || ||||||| |
Sbjct: 809 agcgttcgaatgatgagatatc-ggagctccgagacgaaactcttaa-cggcagagagaa 752
Query: 824 aaaactacgaccatcgggaaagcgatttcggggaacagtacatggaatggctcaagtttg 883
||||||||||| ||| ||||||| |||||| ||||||||||| ||||| ||||||| |||
Sbjct: 751 aaaactacgacaatc-ggaaagc-atttcgaggaacagtacagggaat-gctcaag-ttg 696
Query: 884 aagcaatccc 893
||||||||||
Sbjct: 695 aagcaatccc 686
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6186
Number of Sequences: 1807
Number of extensions: 6186
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)