BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA09FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1354 0.0
>3x_Contig1771
Length = 25932
Score = 1354 bits (683), Expect = 0.0
Identities = 749/762 (98%), Gaps = 8/762 (1%)
Strand = Plus / Plus
Query: 86 ccttcaacgtatttgaatgctagagttatcagagacaatttcaagagacagcaagttgca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18435 ccttcaacgtatttgaatgctagagttatcagagacaatttcaagagacagcaagttgca 18494
Query: 146 gacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacctcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18495 gacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacctcca 18554
Query: 206 aggtcgagaatgtgattctcagttacaactttctgtgatgcctaactatacaagaatgac 265
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18555 aggtcgagaatg-gaagctcagttacaactttctgtgatgcctaactatacaagaatgac 18613
Query: 266 acaaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgatttcag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18614 acaaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgatttcag 18673
Query: 326 attgtgtagatcgcaattcagagaacttgccaggaaaggtgatctacctggtgtgaagaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18674 attgtgtagatcgcaattcagagaacttgccaggaaaggtgatctacctggtgtgaagaa 18733
Query: 386 gggtgtatggtagatgcagtttagcatcttttgttccctgatactgaggttagtaaaagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18734 gggtgtatggtagatgcagtttagcatcttttgttccctgatactgaggttagtaaaagt 18793
Query: 446 tggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataaagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18794 tggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataaagc 18853
Query: 506 ttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18854 ttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgt 18913
Query: 566 ggcaaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18914 ggcaaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaag 18973
Query: 626 tttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18974 tttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaa 19033
Query: 686 aacagaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatgga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19034 aacagaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatgga 19093
Query: 746 aacaaagaaaagaacgagggagaaaaaattagcgaaattcaacggaaaatttattgctga 805
||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 19094 aacaaagaaaagaacga-ggagaaaaaattag-gaaattcaacgg-aaattaattgctga 19150
Query: 806 catttgctatatttaaaaatttgattcaattacaaacaaatg 847
|||||| |||||| |||| |||| ||||||| |||||||||
Sbjct: 19151 catttg-tatatt--aaaaattga-tcaattagaaacaaatg 19188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7866
Number of Sequences: 1807
Number of extensions: 7866
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)