BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA09RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1499 0.0
>3x_Contig1565
Length = 10922
Score = 1499 bits (756), Expect = 0.0
Identities = 796/808 (98%), Gaps = 1/808 (0%)
Strand = Plus / Plus
Query: 43 gcttctgtccattaaatctactgttataaaacgctcagtttcagttggaaagaaaaaaaa 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6112 gcttctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaa 6171
Query: 103 aagacatattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172 aagacatattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgaga 6231
Query: 163 gggacaacaaactttttaccaacccatttcttgttgtgatctttccttaccttatgtata 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct: 6232 gggacaacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaa 6291
Query: 223 ttgcaaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6292 ttgcaaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggta 6351
Query: 283 tttgggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6352 tttgggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaag 6411
Query: 343 cagcgctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaaca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6412 cagcgctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaaca 6471
Query: 403 gttgatattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6472 gttgatattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtaga 6531
Query: 463 tagcgtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatcc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6532 tagcgtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatcc 6591
Query: 523 gatggtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6592 gatggtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaa 6651
Query: 583 agttagtatgatccatttggcgtgcggaaatagtgaccaatcggtaaacttgtggtattt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 agttagtatgatccatttggcgtgcggaaatagtgaccaatcggtaaacttgtggtattt 6711
Query: 643 taactctcagcttccgcggaaaacaatatttgaaggaaagggaagcggtacattgcacag 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 caactctcagcttccgcggaaaacaatatttgaaggaaagggaagcggtacattgcacag 6771
Query: 703 catgcccagttgggtcaattgggccagttggacccctagacctcgtcttgatgaataatt 762
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6772 catgcccagttgggtcaattgggccagttggacccctagacctcgttttgatgaataatt 6831
Query: 763 gaggctacagtgctccaatcaccctccgtatt-ttatcacttcggagacaacgctgcgtc 821
|||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||
Sbjct: 6832 gaggctacagtgctccaatcaccctccgtattctcatcactccgtagacaacgctgcgtc 6891
Query: 822 ggaaatttaggaagctcataaggttaaa 849
||||||||||||||||||||||||||||
Sbjct: 6892 ggaaatttaggaagctcataaggttaaa 6919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8852
Number of Sequences: 1807
Number of extensions: 8852
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)