BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA10FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1459 0.0
>3x_Contig1799
Length = 39855
Score = 1459 bits (736), Expect = 0.0
Identities = 807/823 (98%), Gaps = 6/823 (0%)
Strand = Plus / Minus
Query: 86 ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27559 ctaaggcaaaaacattatatcacatgcaaatagccaagcaataatgaaccttaccatcca 27500
Query: 146 agactgattatttgctacgctaaccataagaatagtaaaccttaatttataactgaaata 205
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27499 agactgattattt-ctacgctaaccataagaatagtaaaccttaatttataactgaaata 27441
Query: 206 agttttagtatacaccagcgaagaaaagaaaatgtacaaatacatatatatatatagaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27440 agttttagtatacaccagcgaagaaaagaaaatgtacaaatacatatatatatatagaac 27381
Query: 266 tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27380 tgtcacaaacgataattcttctcggagaaaacctacaaacgataggagaaaagggtccag 27321
Query: 326 aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27320 aggaaacgggttatttattaagaaaataggaagagagaagaattaggcatagagataatg 27261
Query: 386 atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27260 atatagtaaaaggaaagcttgtccttcaaagtcttatatcatttctgagagtccatagaa 27201
Query: 446 tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27200 tgtaaaaaaaaattaataaaaggaaaaggaaaagggttaaaaagtcaagtggtatgagag 27141
Query: 506 tttttcatcagttgcgcttggataattaaaatttgtacagcctctgatagccaggaaatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27140 tttttcatcagttgcgcttggataattaaaatttgtacagcctctgatagccaggaaatg 27081
Query: 566 tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaattaaacttaaagtc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27080 tgtaagagtcacagatctctgacatgtcgtatcggtagtaattgaattaaacttaaagtc 27021
Query: 626 aatttgtattgtatcctatttctatttcatttgagtttagtttagtttcgtctccgccct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27020 aatttgtattgtatcctatttctatttcatttgagtttagtttagtttcgtctccgccct 26961
Query: 686 gcacgcttctttgatctttcaattcaaccagagaatcgggagatcgacggccgatctaca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26960 gcacgcttctttgatctttcaattcaaccagagaatcgggagatcgacggccgatctaca 26901
Query: 746 attcgaacattttcgatgacaagtcatcaaggaaagagaaggtggatacagatatcttga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26900 attcgaacattttcgatgacaagtcatcaaggaaagagaaggtggatacagatatcttga 26841
Query: 806 acagtttgttnctagtgccactgtaccagtcaattttgag-ataattagatcca-gaaag 863
|||| ||||| |||||||||||| ||||||||| |||||| ||||| ||||||| ||| |
Sbjct: 26840 acag-ttgtttctagtgccactgaaccagtcaa-tttgagaataataagatccaggaagg 26783
Query: 864 aaagttgttgaaaaaaa-gtttttaaaaaacagtttgctcaca 905
||||| || |||||||| | | | ||||||||||| |||||||
Sbjct: 26782 aaagtagtagaaaaaaaggatgtaaaaaaacagttagctcaca 26740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,571
Number of Sequences: 1807
Number of extensions: 11571
Number of successful extensions: 235
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)