BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZA10RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1799                                                        1156   0.0  

>3x_Contig1799 
          Length = 39855

 Score = 1156 bits (583), Expect = 0.0
 Identities = 626/635 (98%), Gaps = 4/635 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    ggatagtctgacggcggatctgtggaaagctctaactaaagttgggttcattgtagtata 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24124 ggatagtctgacggcggatctgtggaaagctctaactaaagttgggttcattgtagtata 24183

                                                                         
Query: 108   ttgattattatttgtcctgtgtgaagtgatgcgacagtaaacagtttgttgtcctgattg 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24184 ttgattattatttgtcctgtgtgaagtgatgcgacagtaaacagtttgttgtcctgattg 24243

                                                                         
Query: 168   tagcttgggacagttttgaagggaaattaggatatacgattaacaggtacattagaaggg 227
             |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 24244 tagcttgggacagttttgaagggaaattaggatatacgattaacaggtacaaaagaaggg 24303

                                                                         
Query: 228   aaagcgctaaggtttcaagaagaatttaacggcatatataatcagtctttatatagtcat 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24304 aaagcgctaaggtttcaagaagaatttaacggcatatataatcagtctttatatagtcat 24363

                                                                         
Query: 288   tccttttggagttgcatctgaaaagtgatgatactttgcacgtccctggggtatcagcgt 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24364 tccttttggagttgcatctgaaaagtgatgatactttgcacgtccctggggtatcagcgt 24423

                                                                         
Query: 348   ataattattatttgccggtattccaagtatagattgaattcaaatcataccaattgaaat 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24424 ataattattatttgccggtattccaagtatagattgaattcaaatcataccaattgaaat 24483

                                                                         
Query: 408   ggaaatctcaccatattttcagctattctctgatttccactgtttatcttgtggaagtat 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24484 ggaaatctcaccatattttcagctattctctgatttccactgtttatcttgtggaagtat 24543

                                                                         
Query: 468   atcctcttccaatggtgtgagataacaatcaaaatgtggtaccggctggggactccagaa 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24544 atcctcttccaatggtgtgagataacaatcaaaatgtggtaccggctggggactccagaa 24603

                                                                         
Query: 528   agtatgacaatcacccgcatacggaaagttatagaaacactttcctgttttctgtacata 587
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24604 agtatgacaatcacccgcatacggaaagtaatagaaacactttcctgttttctgtacata 24663

                                                                         
Query: 588   tttccccgatatttccaaaccccaatatcatctacggtgtccctattttctcctaatgtt 647
             ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 24664 ttt-cccgataattccaaaccccaatatcatctacggtgtcccta-tttctcctaatgtt 24721

                                                
Query: 648   cccttcctatgggcttattatagaacagccaaaat 682
              ||||||||| |||||||||||||||||| |||||
Sbjct: 24722 -ccttcctat-ggcttattatagaacagcgaaaat 24754


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6863
Number of Sequences: 1807
Number of extensions: 6863
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)