BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA11FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1354 0.0
>3x_Contig985
Length = 5529
Score = 1354 bits (683), Expect = 0.0
Identities = 805/834 (96%), Gaps = 9/834 (1%)
Strand = Plus / Minus
Query: 87 taaccttttattaggtaacctcaatgttttggcagctttatactccttttcaacaaaccg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3693 taaccttttattaggtaacctcaatgttttggcagctttatactccttttcaacaaaccg 3634
Query: 147 gtaaaatgatggaggtagaggttcatttattaagtgagaaataggttccaagatatgatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 gtaaaatgatggaggtagaggttcatttattaagtgagaaataggttccaagatatgatc 3574
Query: 207 gaattgggggatattgtcagcttcttccttgttagtcttggcttccttactaagtgattc 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gaattgggggatatagtcagcttcttccttgttagtcttggcttccttactaagtgattc 3514
Query: 267 attgatcatggctttcttacgttcactctttagcctagctcttatttccggtatagagtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 attgatcatggctttcttacgttcactctttagcctagctcttatttccggtatagagtt 3454
Query: 327 accaaaactagatgttacatttcccgtattgtgttgctcaggagggagtgagctttgccc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3453 accaaaactagatgttacatttcccgtattgtgttgctcaggagggagtgagctttgccc 3394
Query: 387 tccagatcctgatttgttgtacttattggaagatggacgctttcccaacgttattggatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3393 tccagatcctgatttgttgtacttattggaagatggacgctttcccaacgttattggatt 3334
Query: 447 cacctggttgtacgtgttcattgctttataagctaattttgaccaatatattaagcgtaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3333 cacctggttgtacgtgttcattgctttataagctaattttgaccaatatattaagcgtaa 3274
Query: 507 ggcgagccacaaccgtctgcaacagttagtattggttagtaggttttatggtagtctttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 ggcgagccacaaccgtctgcaacagttagtattggttagtaggttttatggtagtctttt 3214
Query: 567 tgccgtgaattcttagtttattactcagtttcattgggttttgtagctcttttgccagtt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 tgccgtgaattcttagtttattactcagtttcattgggttttgtagctcttttgccagtt 3154
Query: 627 ttcaatcagtattttttcagtagaaaatgagccaagtactcagactgaacaatcaatagt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 ttcaatcagtattttttcagtagaaaatgagccaagtactcagactgaacaatcaatagt 3094
Query: 687 gtaaactagacacatttaagactttgaatgtgtccactcaccacttatcagttaattaaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3093 gtaaactagacacatttaagactttgaatgtgtccactcaccacttatcagttaaataaa 3034
Query: 747 -gtcactcaagtt-actcaaaatttc-acctttcaaa-gaaatcactttc-attgaacct 801
|||||||||||| |||||||||||| |||||||||| |||||||||| | ||||| |
Sbjct: 3033 tgtcactcaagttaactcaaaatttcaacctttcaaaggaaatcacttccaattgacctg 2974
Query: 802 gcacattatt-ttttgcacaaccattat-taaaat-tacttaaagctatntatttgaccc 858
|||||||||| | |||||||| |||||| |||||| ||||| ||||||| ||| |||| |
Sbjct: 2973 gcacattattatattgcacaaacattatgtaaaatatactttaagctatttatctgacgc 2914
Query: 859 at-ccctaaagcattttgaaactcctgttgccaaatataagaacctgtctgttt 911
|| | |||| |||| |||||||||||||||| | ||| |||| | |||||||||
Sbjct: 2913 atgcactaaggcatcttgaaactcctgttgcgacatagaagagcatgtctgttt 2860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5949
Number of Sequences: 1807
Number of extensions: 5949
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)