BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZA11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1534 1241 0.0
>3x_Contig1534
Length = 9979
Score = 1241 bits (626), Expect = 0.0
Identities = 775/818 (94%), Gaps = 5/818 (0%)
Strand = Plus / Minus
Query: 49 acgacgagtatcttcagcacccatgaagactgtacattctagaccaaacttggcacatgc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4303 acgacgagtatcttcagcacccatgaagactgtacattctagaccaaacttggcacatgc 4244
Query: 109 ggtagcagttgccacaccgtgttggccggcaccagtttcagcaatgacctttttcttacc 168
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 ggtag-agttgccacaccgtgttggccggcaccagtttcagcaatgacctttttcttacc 4185
Query: 169 cagtctcttggcaattaaaacttgagccaaggcattgttaatcttgtgcgaaccagtgtg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4184 cagtctcttggcaattaaaacttgagccaaggcattgttaatcttgtgcgaaccagtgtg 4125
Query: 229 gttcaaatcttctctctttaaccagatttgagcaccgccacagtattcagtcaatctgtc 288
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 4124 gttcaaatcttctctctttaaccagattttagcaccgccacagtattcagtcaatctttt 4065
Query: 289 agccttgtggaaggaggaaggacgaccaatatagctgtataaactcttgaattcttccca 348
|||||| | || || ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 4064 agccttttttttggtggtaggtcgaccaatatagctttataaactcttttattcttccca 4005
Query: 349 gaatgctggatcagcgacggcatcttcgaagcctctttccaattgtcttagacaagcatg 408
|||| |||| | |||| ||||||||||| | |||||||||||||| |||||||||||||
Sbjct: 4004 gaattctggtttagcgtcggcatcttcgtattctctttccaattgttttagacaagcatg 3945
Query: 409 tagagcttctggaacgtattgtccaccaaactctccgaaacgagccgggaacttgtggaa 468
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3944 tagagcttccggtacgtattgtccaccaaactctccgaaacgagccgggaacttgtggaa 3885
Query: 469 ttcttcgaactctttggcaactgttttattttccttagcagttgcaacattggccttgtg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 ttcttcgaactctttggcaactgttttattttccttagcagttgcaacattggccttgtg 3825
Query: 529 aatgttccagaactcttctttagaaagaaccttccccttcttaccaccagagatttcttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 aatgttccagaactcttctttagaaagaaccttccccttcttaccaccagagatttcttc 3765
Query: 589 agcgtaattctttgcagtttcataacgtttatcttgagcagcctcaccgatcaaagtaac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3764 agcgtaattctttgcagtttcataacgtttatcttgagcagcctcaccgatcaaagtaac 3705
Query: 649 gatcttggaaccaatgacaacaccatcggaaacagatccaacgacatcaaaatgctcctt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3704 gatcttggaaccaatgacaacaccatcggaaacagatccaacgacatcaaaatgctcctt 3645
Query: 709 ggtagagataccgaacccaacagccaatgggatttcaccagaggatgatctaactttttt 768
|||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||
Sbjct: 3644 ggtagagataccgaacccaacagccaatggaatatcaccagagaatgatctaac-ttttt 3586
Query: 769 ggacaagagcactttaatcggttagcgactgatttttttgccaccattgttacccatcct 828
|||||||||||||| |||| |||||||||||| || | || ||||| || ||||||||||
Sbjct: 3585 ggacaagagcacttaaatc-gttagcgactga-ttctctggcaccagtggtacccatcct 3528
Query: 829 tgagacaccttagttgaatgaattcaccgagatgggac 866
|||||| | ||| |||||||| ||| |||||||||||
Sbjct: 3527 ggagacaacatagatgaatgaa-tcagcgagatgggac 3491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6369
Number of Sequences: 1807
Number of extensions: 6369
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)