BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC26ZA12RM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig336 793 0.0 >3x_Contig336 Length = 1357 Score = 793 bits (400), Expect = 0.0 Identities = 466/484 (96%), Gaps = 3/484 (0%) Strand = Plus / Plus Query: 38 cttcaagctggaatcatctctcttatattcactgattgacttggtcttttttcccttccc 97 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 cttcaagctggaatcatctctcttatattcactgattgacttggtcttttttcccttccc 686 Query: 98 tgtcacgctggactaattgcatcattattgaccgttgaattatttactgtctcactttgt 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 tgtcacgctggactaattgcatcattattgaccgttgaattatttactgtctcactttgt 746 Query: 158 taatttggagggttgatagatattatattggcttccataagacgaatctattttctctcg 217 |||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 747 taatttggagggttgatagatattatattggcttccataagacgaatctaactttac-cg 805 Query: 218 taaaataagagtaccttgggataattgtccttcttttttgacaggaaaggtatttagttc 277 ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| Sbjct: 806 taaaataagagtacctttttataattgtccttcttttttgacattaaatttatttagttc 865 Query: 278 ggacttattgtttcttctctacatcgttcaaatagtgggttaaaagacaggatgcacttc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 ggacttattgtttcttctctacatcgttcaaatagtgggttaaaagacaggatgcacttc 925 Query: 338 aaatcattgaaatgtaagttctactgtaaggggtatcattcctctgcacataaatcggca 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 aaatcattgaaatgtaagttctactgtaaggggtatcattcctctgcacataaatcggca 985 Query: 398 acgtccttttttgatagctcgtaccagtatttgaaacagaatccgggacttgtgaacttg 457 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 986 acgtccttttttgatagctcgtaccagtatttgaaacagaatcagggacttgtgaacttg 1045 Query: 458 gatactgctattcct-aaaataacatttttgactgctgtttcacatcccgtattggtggc 516 ||||||||||||||| || |||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 1046 gatactgctattcctcaacataaca-ttttgactgctgttccacatcccgtagtggtggc 1104 Query: 517 caac 520 |||| Sbjct: 1105 caac 1108 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,944 Number of Sequences: 1807 Number of extensions: 10944 Number of successful extensions: 98 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)