BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZA12RM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig336                                                          793   0.0  

>3x_Contig336 
          Length = 1357

 Score =  793 bits (400), Expect = 0.0
 Identities = 466/484 (96%), Gaps = 3/484 (0%)
 Strand = Plus / Plus

                                                                        
Query: 38   cttcaagctggaatcatctctcttatattcactgattgacttggtcttttttcccttccc 97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  cttcaagctggaatcatctctcttatattcactgattgacttggtcttttttcccttccc 686

                                                                        
Query: 98   tgtcacgctggactaattgcatcattattgaccgttgaattatttactgtctcactttgt 157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  tgtcacgctggactaattgcatcattattgaccgttgaattatttactgtctcactttgt 746

                                                                        
Query: 158  taatttggagggttgatagatattatattggcttccataagacgaatctattttctctcg 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||  | ||
Sbjct: 747  taatttggagggttgatagatattatattggcttccataagacgaatctaactttac-cg 805

                                                                        
Query: 218  taaaataagagtaccttgggataattgtccttcttttttgacaggaaaggtatttagttc 277
            |||||||||||||||||   |||||||||||||||||||||||  |||  ||||||||||
Sbjct: 806  taaaataagagtacctttttataattgtccttcttttttgacattaaatttatttagttc 865

                                                                        
Query: 278  ggacttattgtttcttctctacatcgttcaaatagtgggttaaaagacaggatgcacttc 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  ggacttattgtttcttctctacatcgttcaaatagtgggttaaaagacaggatgcacttc 925

                                                                        
Query: 338  aaatcattgaaatgtaagttctactgtaaggggtatcattcctctgcacataaatcggca 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  aaatcattgaaatgtaagttctactgtaaggggtatcattcctctgcacataaatcggca 985

                                                                        
Query: 398  acgtccttttttgatagctcgtaccagtatttgaaacagaatccgggacttgtgaacttg 457
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 986  acgtccttttttgatagctcgtaccagtatttgaaacagaatcagggacttgtgaacttg 1045

                                                                        
Query: 458  gatactgctattcct-aaaataacatttttgactgctgtttcacatcccgtattggtggc 516
            ||||||||||||||| || |||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 1046 gatactgctattcctcaacataaca-ttttgactgctgttccacatcccgtagtggtggc 1104

                
Query: 517  caac 520
            ||||
Sbjct: 1105 caac 1108


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,944
Number of Sequences: 1807
Number of extensions: 10944
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)