BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB01FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig247 882 0.0
>3x_Contig247
Length = 997
Score = 882 bits (445), Expect = 0.0
Identities = 458/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 87 accttatcaaaattgatggatattgagttccgatccctcgccgtaatatttcataacttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 accttatcaaaattgatggatattgagttccgatccctcgccgtaatatttcataacttt 848
Query: 147 aaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtctcca 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtctcca 788
Query: 207 gtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactgata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactgata 728
Query: 267 tcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcattatcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcattatcg 668
Query: 327 gggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatataaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatataaa 608
Query: 387 ctctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagataaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagataaga 548
Query: 447 agcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcgact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcgact 488
Query: 507 tgagtttgatttttgggttagcaggtaactttcccactatt 547
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 487 tgagtttga-ttttgggtaagcaggtaactttcccactatt 448
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,029
Number of Sequences: 1807
Number of extensions: 14029
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)