BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 1475 0.0
>3x_Contig1228
Length = 5992
Score = 1475 bits (744), Expect = 0.0
Identities = 833/854 (97%), Gaps = 7/854 (0%)
Strand = Plus / Plus
Query: 86 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580
Query: 146 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640
Query: 206 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700
Query: 266 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 760
Query: 326 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 820
Query: 386 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 880
Query: 446 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 940
Query: 506 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 1000
Query: 566 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 1060
Query: 626 gtggaagatgaacctcaaacctgngtcgacgtcgctgaagcgatcattgatttanggaac 685
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 1061 gtggaagatgaacctcaaacctgggtcgacgtcgctgaagcgatcattgatttagggaac 1120
Query: 686 ctttacgattacgaatcgaaagaacaggaagactcttaccagagagcagagggaaatttt 745
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1121 ctttacgattacgaatcgaaagaacaggaagactcttacaagagagcaga-ggaaatttt 1179
Query: 746 acctgaa-gctaacaaggccactcatggtaaataccaagttatcctggacaatttgttga 804
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 a-ctgaaggctaacaaggcaactcatggtaaataccaagttatcctggacaatttgttga 1238
Query: 805 acaaagattaag-ttcccctcaatgtatagtggaaaatatttatttttatagaaaaac-a 862
|||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 1239 acaaagattaagtttcccctcaatgtatagtgg-aaatatttagttttatagaaaaacaa 1297
Query: 863 ggatttaattattataatataacgatttgtggacctgaacacccctagatttgtggttac 922
| ||| |||||||||||||||||||| |||| || ||||||||| ||||||| |||||
Sbjct: 1298 gaattaaattattataatataacgatatgtgaacatgaacaccctatgatttgt-gttac 1356
Query: 923 ggcactgccatcct 936
||||||| ||||||
Sbjct: 1357 ggcactggcatcct 1370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7211
Number of Sequences: 1807
Number of extensions: 7211
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)