BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB03FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1554 0.0
>3x_Contig1806
Length = 53694
Score = 1554 bits (784), Expect = 0.0
Identities = 823/834 (98%), Gaps = 2/834 (0%)
Strand = Plus / Minus
Query: 87 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31544 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 31485
Query: 147 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31484 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 31425
Query: 207 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31424 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 31365
Query: 267 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 31305
Query: 327 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31304 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 31245
Query: 387 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31244 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 31185
Query: 447 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31184 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 31125
Query: 507 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31124 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 31065
Query: 567 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31064 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 31005
Query: 627 aggtttagtcacttttcgtattggctattttgttcattctatgctaagtgcatgggctat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31004 aggtttagtcacttttcgtattggctattttgttcattctatgctaagtgcatgggctat 30945
Query: 687 tgttacttcataactaatagttttcaacttgatgaactctgtgaatactgctcgagaata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30944 tgttacttcataactaatagttttcaacttgatgaactctgtgaatactgctcgagaata 30885
Query: 747 tggttctgaaat-aattttatacatacttctatcaggtactgtttgcatcaatagcatac 805
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30884 tggttctgaaatcaattttatacatacttctatcaggtactgtttgcatcaatagcatac 30825
Query: 806 ataaagg-gcaaataatagtattcttgcaatgtcattgacgtcgaactggcataaatnaa 864
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 30824 ataaaggcaaaaataatagtattcttgcaatgtcattgacgtcgaactggcataaataaa 30765
Query: 865 tgttctaataccgatagtgaattaagttaatagtncgaaagtgctcaaagaatg 918
||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct: 30764 tgttctaataccgatagtgaattaagtaatcagtcgaaaagtgctcaaagaatg 30711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7034
Number of Sequences: 1807
Number of extensions: 7034
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)