BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB03RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1513 0.0
>3x_Contig1711
Length = 15491
Score = 1513 bits (763), Expect = 0.0
Identities = 862/885 (97%), Gaps = 8/885 (0%)
Strand = Plus / Minus
Query: 46 aacggtgttttcaccacatgccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 105
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 aacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 7826
Query: 106 tccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcctc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 tccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcctc 7766
Query: 166 tgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgtttttttttcttccaga 225
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7765 tgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttccttccaga 7706
Query: 226 aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 7646
Query: 286 tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 7586
Query: 346 cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 7526
Query: 406 ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7525 ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 7466
Query: 466 tcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttcac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7465 tcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttcac 7406
Query: 526 cataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtcataca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7405 cataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtcataca 7346
Query: 586 ctggttcgcttcacagttgtatgtattgtaaaaatggacagcctagacaggtgggcagcg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7345 ctggttcgcttcacagttgtatgtattgtaaaaatggacagcctagacaggtgggcagcg 7286
Query: 646 gggcgcatccaagggccataattgtggaggcgacatgagtcaattccggattcttattgg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7285 gggcgcatccaagggccataattgtggaggcgacatgagtcaattccggattcttattgg 7226
Query: 706 ctgagagcatttnctttctgntcttcttctggatccttaagaccgatcattcattcgaga 765
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7225 ctgagagcatttcttttctgttcttcttctggatccttaagaccgatcattcattcgaga 7166
Query: 766 ggttctatcagggaacaaagttgat-agaccccatttaatgttaaaaacatagtgatagg 824
|||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||
Sbjct: 7165 ggttctatcagggaacaaag-tgataagaccccattaaatgtaaaaaacatagtgatagg 7107
Query: 825 acccccattttttgtattacacaatgatagggaccccattatttattacccctacgtaaa 884
| ||||| | | ||||| ||||||||||| |||||||||||| || || |||||||| ||
Sbjct: 7106 a-ccccagtatatgtataacacaatgata-ggaccccattatata-taaccctacgt-aa 7051
Query: 885 tcactattggtttagtattagttattaagctaaatatttgtttat 929
|||||||||| |||||| |||||| |||||| |||||||||||||
Sbjct: 7050 tcactattgg-ttagtaatagtta-taagcttaatatttgtttat 7008
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7497
Number of Sequences: 1807
Number of extensions: 7497
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)