BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1471 0.0
>3x_Contig1496
Length = 9544
Score = 1471 bits (742), Expect = 0.0
Identities = 784/795 (98%), Gaps = 3/795 (0%)
Strand = Plus / Plus
Query: 87 tgctcgtggctgaacctacattcctgaagcaaaaattcatccttctctcggagttcacta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3485 tgctcgtggctgaacctacattcctgaagcaaaaattcatccttctctcggagttcacta 3544
Query: 147 aggtcgtatctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3545 aggtcgtatctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattga 3604
Query: 207 cgcaatatgtcaatgtaattatcggactcacattttgaaagggaaatgaaccacgtcatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 cgcaatatgtcaatgtaattatcggactcacattttgaaagggaaatgaaccacgtcatt 3664
Query: 267 cagaaaatggggcgttaacaattaaagtagttataagaataggctatgttattgacatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 cagaaaatggggcgttaacaattaaagtagttataagaataggctatgttattgacatgt 3724
Query: 327 aaaagatcgaaacaggagtagtaagattatacacgatataaagggttttctgacctattt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 aaaagatcgaaacaggagtagtaagattatacacgatataaagggttttctgacctattt 3784
Query: 387 tttcaagtattcttgatatccgatagtttctaatttggcagctttcgttaacacctcttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 tttcaagtattcttgatatccgatagtttctaatttggcagctttcgttaacacctcttc 3844
Query: 447 ttcttgtttttgtaagaattgttgcatcttagagaagtatactggatcatacgcacccaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 ttcttgtttttgtaagaattgttgcatcttagagaagtatactggatcatacgcacccaa 3904
Query: 507 aattctgattgctaacaaagcagcatttgtactattgttaattgcaactgtggccacggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 aattctgattgctaacaaagcagcatttgtactattgttaattgcaactgtggccacggg 3964
Query: 567 tacacctcttggcatttgtacaatggaatgtagagaatcgacaccgtctagggtggagcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 tacacctcttggcatttgtacaatggaatgtagagaatcgacaccgtctagggtggagcc 4024
Query: 627 ctttactggaacaccgatgactggncacggagtcatagcagccaccatgcctggtaagtg 686
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4025 ctttactggaacaccgatgactggcaacggagtcatagcagccaccatgcctggtaagtg 4084
Query: 687 ggctgcaccaccagcaccggcaatgatggctttgataccacggttagcagcttcgatagc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 ggctgcaccaccagcaccggcaatgatggctttgataccacggttagcagcttcgatagc 4144
Query: 747 aaacttagacatttctgtgttggagttctatgagcagagacgatggtcacttcatattgg 806
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 aaacttagaca-ttctgtg-tggagttctatgagcagagacgatggtcacttcatattga 4202
Query: 807 atattaaaatcattcaagatatcgcaggccttggacattacccggtaaatcanagnctga 866
||||||||||||||||||||||||||||||||||||| || |||||| |||| || ||||
Sbjct: 4203 atattaaaatcattcaagatatcgcaggccttggaca-taaccggtagatcagagtctga 4261
Query: 867 tcccttaataatact 881
|||| ||||||||||
Sbjct: 4262 tcccataataatact 4276
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5639
Number of Sequences: 1807
Number of extensions: 5639
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)