BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB04RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig845 973 0.0
>3x_Contig845
Length = 3389
Score = 973 bits (491), Expect = 0.0
Identities = 552/567 (97%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 110 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 tgctgatgttgagaaagaacttgaggtaattgagtagctgagccatgtagtggacccaat 3330
Query: 170 cctgttggagttgtatggtcagatagtactgtgtaaggaactttatcatggataggtttg 229
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 3329 cctgttggagttgtatggtcagatagtactgtgtaaggaactttagcagggataggtttg 3270
Query: 230 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 attatgttgacgggagtctggggaccattgattacaaagttaccttgcgcttcaatcgcg 3210
Query: 290 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 agtccatattccgatggtactgagctatgaccgggggttgaattaataggagtgttagaa 3150
Query: 350 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 tacaattgagaaccactgaagttggaaacaggtacggttccgtaagggtaatatggtttg 3090
Query: 410 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 tatgaaattacattaggctgagatgaaccttgagcaatagtaaatgcttgttgggggttt 3030
Query: 470 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgatggggttgttgctgc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 tgattcgcctgcaactgttgatgttgctgttgatgttgttgctgatggggttgttgctgc 2970
Query: 530 tgctgttgttgttgctgctgctgagattgctgctgagattgctgcttggggttgctgctt 589
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 2969 tgctgttgttgttgctgctgctgagattgctgctgagattgctgc-tggggttgctgc-t 2912
Query: 590 ggcgcttgtaattgaatttgcgcctgcagtggctggttgtggaagaacatgttccaaagg 649
|| || ||||||||||| |||||||||||||||| |||| ||| || || || |||||||
Sbjct: 2911 ggggc-tgtaattgaatctgcgcctgcagtggct-gttggggaggagcaggtgccaaagg 2854
Query: 650 attcatgaagacactcatatgcctttt 676
|| ||||| ||||||||||||||||||
Sbjct: 2853 atccatgaggacactcatatgcctttt 2827
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,936
Number of Sequences: 1807
Number of extensions: 10936
Number of successful extensions: 517
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)