BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1398 0.0
>3x_Contig1571
Length = 13536
Score = 1398 bits (705), Expect = 0.0
Identities = 818/844 (96%), Gaps = 9/844 (1%)
Strand = Plus / Minus
Query: 86 cctcacttggtgctcttgaagagtaaaaagcgagtagacggagggctaatacgaagaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 cctcacttggtgctcttgaagagtaaaaagcgagtagacggagggctaatacgaagaatt 2711
Query: 146 ttttgtcttgagcgcagtagatatatagaacatcatctgataatgttccattgcaaagct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2710 ttttgtcttgagcgcagtagatatatagaacatcatctgataatgttccattgcaaagct 2651
Query: 206 ctttaggcaaaatatgatttgtgactgattgcaatagagctctgtttgcattaattagcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2650 ctttaggcaaaatatgatttgtgactgattgcaatagagctctgtttgcattaattagcc 2591
Query: 266 tttcagtagtggacatagttgataacgttagtttgatggctttcatctcttctaagatgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2590 tttcagtagtggacatagttgataacgttagtttgatggctttcatctcttctaagatgt 2531
Query: 326 gtgtggtactggaaatactttgatgtttggcgaagcacctgcttatatataattgtttct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2530 gtgtggtactggaaatactttgatgtttggcgaagcacctgcttatatataattgtttct 2471
Query: 386 aatttctaagaacaccccatgctaattcggggcaattgtaaccgcacacatcatattcgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2470 aatttctaagaacaccccatgctaattcggggcaattgtaaccgcacacatcatattcgc 2411
Query: 446 tggaaaatggtattaaaaggcaaataatgagatttggtatgactatatacagaattaaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2410 tggaaaatggtattaaaaggcaaataatgagatttggtatgactatatacagaattaaat 2351
Query: 506 ataataaattgatgtgaaaacctctgatgggttcaacgacgtaaaaaggattgaaaagcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2350 ataataaattgatgtgaaaacctctgatgggttcaacgacgtaaaaaggattgaaaagcg 2291
Query: 566 tcttgattgatctggatgttaccgacagttttcatgttctttttcccttgtttttgttta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 tcttgattgatctggatgttaccgacagttttcatgttctttttcccttgtttttgttta 2231
Query: 626 gataaaagc-ttttcctacgtganatgtcacttgcatgaagcttggataaaacatgcttt 684
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 2230 gataaaagctttttcctacgtgaaatgtcacttgcatgaagcttggataaaacatccttt 2171
Query: 685 ctcttagcttttattggctctcttgcaatgaattttatattgggctctggcttgaatgac 744
|||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||
Sbjct: 2170 ctcttagcttttattgtctctcttgcaatg-attttattattggctctggcttgaatgac 2112
Query: 745 cacttcggacaattggagattttatgaactttttggaatttttttacccattccttaccg 804
||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2111 cacttcgaacaatt-gagattttatgaacttttt-gaatttttttacccattccttaccg 2054
Query: 805 atatgctctggtttaatcttctgtgcataacttgggcaagaccattcacacttttaacat 864
||||||||| |||| ||| ||||||||||||||| |||||| ||| |||||||||| |||
Sbjct: 2053 atatgctct-gtttgatc-tctgtgcataacttgtgcaagagcatccacacttttaccat 1996
Query: 865 taaacaggagctctagcttcactatattcgtttggtttggtatcctacatctctcataat 924
||| || |||||||||||||||||| ||| || |||| ||||||||||||| |||||||
Sbjct: 1995 taacaagaagctctagcttcactata-tcgctttgttt-gtatcctacatct-tcataat 1939
Query: 925 cgag 928
||||
Sbjct: 1938 cgag 1935
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6994
Number of Sequences: 1807
Number of extensions: 6994
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)